Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0838
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    27   2.8  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   5.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.7  

>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 315 RQSCNKPGWDIAARAMQT 368
           RQ C KPG+DI   ++QT
Sbjct: 48  RQYCTKPGYDIYGNSVQT 65


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 567 SNKDDMETEHLATLERLRQNQRPD 638
           +NK D E E++A  +R   N+ PD
Sbjct: 225 NNKSDYEKEYMALRKRYDSNEEPD 248


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 PLEMVEDAGRSNKDDMETEHL-ATLERLRQN 626
           P +  E AG +NKD +ET HL  T+  L  N
Sbjct: 12  PPDEEESAGLTNKDIVETNHLYPTITNLSLN 42


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 279 CHNWILTFSNQTGGVVGYVS---VMFACISYFFP 187
           C   IL++ N+T  +  ++S   V FA ++YF+P
Sbjct: 197 CFRSILSWHNETFNIWTHLSAFIVFFAVLAYFYP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,736
Number of Sequences: 5004
Number of extensions: 59973
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)