Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0838
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709...    29   3.0  

>02_04_0363 +
           22369461-22370127,22370240-22370310,22370412-22370978,
           22371056-22371301
          Length = 516

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 315 SSLSVSEYLNSICHNWILTFSNQTGGVVGYVSVMFAC-ISYFFPFLPTNLQVS 160
           ++L +   +  +C +  + F++  GGVV   +VM+     Y FPFL T  +V+
Sbjct: 294 ANLHLHPQIERLCDDGRVVFADGGGGVVAADTVMYCTGYRYSFPFLDTEGKVA 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,511
Number of Sequences: 37544
Number of extensions: 374110
Number of successful extensions: 965
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)