Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0838
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical pr...    87   2e-17
AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin con...    87   2e-17
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      30   1.5  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    30   1.5  
Z81512-4|CAB04170.1|  550|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm rec...    30   2.0  
Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    29   2.6  
U39994-1|AAB37019.1|  326|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm rece...    28   8.1  

>Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical
           protein F25H2.8 protein.
          Length = 387

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 37/67 (55%), Positives = 48/67 (71%)
 Frame = +2

Query: 59  MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHANITETYPTT 238
           MACL  LK +I+ LE++FPKNH RFQI+SASVDEL+ +F+    K   + ANI E YP  
Sbjct: 1   MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYPRQ 60

Query: 239 PPVWFEK 259
           PP+WF +
Sbjct: 61  PPIWFSE 67



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = +3

Query: 540 LEMVEDAGRSNKD-DMETEHLATLERLRQNQRPDYLSGSVSGSLQATDRLMKELRDIYRS 716
           +EM E+   S  D  +  E L  L+++ +  R  +L G V GS+ ATDRLMKE+RDI+RS
Sbjct: 170 VEMAEEDPTSQHDVGVSKEGLDMLDKVSKINRQQHLDGKVQGSITATDRLMKEIRDIHRS 229

Query: 717 HSFKNNMYS 743
             FKN +Y+
Sbjct: 230 EHFKNGIYT 238


>AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin
           conjugating enzyme UBC-25 protein.
          Length = 387

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 37/67 (55%), Positives = 48/67 (71%)
 Frame = +2

Query: 59  MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHANITETYPTT 238
           MACL  LK +I+ LE++FPKNH RFQI+SASVDEL+ +F+    K   + ANI E YP  
Sbjct: 1   MACLRKLKEDIQVLEKLFPKNHNRFQILSASVDELSMKFINAENKGIIVTANIQENYPRQ 60

Query: 239 PPVWFEK 259
           PP+WF +
Sbjct: 61  PPIWFSE 67



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
 Frame = +3

Query: 540 LEMVEDAGRSNKD-DMETEHLATLERLRQNQRPDYLSGSVSGSLQATDRLMKELRDIYRS 716
           +EM E+   S  D  +  E L  L++  +  R  +L G V GS+ A+DRLMKE+RDI+RS
Sbjct: 170 VEMAEEDPTSQHDVGVSKEGLDMLDKASKINRQQHLDGKVQGSITASDRLMKEIRDIHRS 229

Query: 717 HSFKNNMYS 743
             FKN +Y+
Sbjct: 230 EHFKNGIYT 238


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -2

Query: 663 CQTHCRIDSPAFGSVSVALVSLNVQFPCHPCCYGQHLQPSQV 538
           CQT C   +PA  +          Q  C P C  Q  QP ++
Sbjct: 659 CQTACATQTPAVQAAPAPSCQPQCQPACEPVCIAQQAQPVRI 700


>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 59  MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHA 211
           +A +  L+ E+K+LE  F   HE  +++   +  L  R       +YEIHA
Sbjct: 102 IALMRHLQSEVKSLETEFQTRHEDQRVLIEKICNLKKRLESDFEFEYEIHA 152


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 59  MACLNTLKLEIKTLEQVFPKNHERFQIMSASVDELTCRFVGKNGKKYEIHA 211
           +A +  L+ E+K+LE  F   HE  +++   +  L  R       +YEIHA
Sbjct: 102 IALMRHLQSEVKSLETEFQTRHEDQRVLIEKICNLKKRLESDFEFEYEIHA 152


>Z81512-4|CAB04170.1|  550|Caenorhabditis elegans Hypothetical
           protein F25C8.4 protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5   ILTWIETIYNKN*CSHTLMACLNTLKLEIKTLEQVFPKNHERFQI--MSASVDELTCRFV 178
           +L  +  +  KN C HT M C+   K+    L   +  N   F+    + +++ L     
Sbjct: 242 LLNGLTVVTEKNFCVHTFMTCIQRYKIRAVHLTP-YLMNLMMFEAENHTYNIESLEWVVT 300

Query: 179 GKNGKKYEIHANITETYPTTPPV 247
           G +    E++   TE +P+   V
Sbjct: 301 GADAVTEELYEEFTEIFPSVKTV 323


>AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 164 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
 Frame = -2

Query: 315 SSLSVSEYLNSICHNWILTFSNQTGGVVGYVSVMFACISYFF--------PFLPTNLQVS 160
           +S   S  LNS+    ILT S +  G   Y+ + F+C + FF        PF+  + Q S
Sbjct: 14  TSFVFSICLNSLLIYLILTKSPKKMGNYRYLMIYFSCFAMFFSTCDVIVGPFI-HSFQKS 72

Query: 159 SSTLADII*KRSWFFGNTCSNVLI 88
              LAD   + +W  G T    LI
Sbjct: 73  FCVLAD---RTNWLLGETTQFALI 93


>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 336 LVYYMIVSSLSVSEYLNSICHNWILTFSNQTGGVVGYVSVMFACISYFFPFL 181
           L YY+       S +LNSI    I   S QT G   Y+   F+  S  + F+
Sbjct: 7   LAYYIETIGFVTSTFLNSILLFLISKMSKQTFGNYNYLMFSFSSFSIVYSFV 58


>U39994-1|AAB37019.1|  326|Caenorhabditis elegans Hypothetical
           protein C48C5.3 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 238 CGGVCFSYVCVYFIFLSIFAN 176
           CG + FS+ C+YF+ L+   N
Sbjct: 275 CGSIIFSWTCLYFVSLNAILN 295


>AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 174 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 318 VSSLSVSEYLNSICHNWILTFSNQTGGVVGYVSVMFACISYFFPFLPTNLQVSSST 151
           V S+ +S  +NSI    I+T S +  G   ++ + F C S FF  +   +Q +  T
Sbjct: 16  VVSVFLSITINSILICLIITKSPKIMGTYRHLMIYFCCCSIFFSIVDVIVQPNIQT 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,691
Number of Sequences: 27780
Number of extensions: 342689
Number of successful extensions: 976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)