Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0838
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.00 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   7.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 487 LPLYQIQHHLM*HLVL 440
           LP+YQ  HHL  H VL
Sbjct: 67  LPIYQSHHHLHHHQVL 82


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 640 IYPAVCLAVSKPRTDS*RSSGTYTV 714
           +YP V L   + +TD   +SG YT+
Sbjct: 410 MYPPVPLIAREIKTDLKLASGDYTI 434


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 388 GVLVLHVVCIALAAISQPGLLHDCLV 311
           G LV+ ++C      S   LLH C++
Sbjct: 94  GELVMGILCKKTLGTSAGSLLHICML 119


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 365 NYMEYQNPQT*IHYPCQYIQR 427
           NY  Y N    +HY   YI++
Sbjct: 323 NYNNYNNNYKPLHYNINYIEQ 343


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 203 IHANITETYPTTPPVW 250
           + A +T TYPT  P W
Sbjct: 472 VAAALTGTYPTLLPQW 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,409
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)