Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0837
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 127 2e-30
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 48 2e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 36 0.005
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 28 1.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 28 1.8
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 5.6
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 7.4
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 9.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 127 bits (307), Expect = 2e-30
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +1
Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
LEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IPVG TLGRI+NVIGEP+DERG
Sbjct: 94 LEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERG 153
Query: 436 PIPTDKTAAIHAEAPEFVDMS 498
PI K + IHA+AP F + S
Sbjct: 154 PIKAVKYSPIHADAPSFEEQS 174
Score = 105 bits (253), Expect = 6e-24
Identities = 53/81 (65%), Positives = 58/81 (71%)
Frame = +3
Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 689
IL TGIKVVDLLAPYA TV I ELINN+AKAHGGYSVF GVGERTR
Sbjct: 179 ILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTR 238
Query: 690 EGNDLYHEMIESGVISLKDKT 752
EGNDLY EM E+GVI L+ ++
Sbjct: 239 EGNDLYREMQETGVIKLEGES 259
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +2
Query: 755 QGSLVYGQMNEPPGARARVAL 817
+ +LV+GQMNEPPGARARVAL
Sbjct: 260 KAALVFGQMNEPPGARARVAL 280
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +2
Query: 182 DVQFED--NLPPILNALEVQ 235
D QFED +LP ILNALEV+
Sbjct: 66 DCQFEDADSLPSILNALEVK 85
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 438
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 439 IPTDKTAAIHAEAP 480
I T + + +AP
Sbjct: 149 IKTTERRRVQLKAP 162
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 36.3 bits (80), Expect = 0.005
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 LEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDER 432
LEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID +
Sbjct: 64 LEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID-K 118
Query: 433 GP 438
GP
Sbjct: 119 GP 120
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = -2
Query: 699 HFLHEYALLLQQTQSNHHGLW----QHC*SVP*SIQFCPHQLRQTTQSFLLWHKERADRR 532
H +++ L + T + +G W + C +R Q+F + K AD+R
Sbjct: 169 HSMYQIKLSIHATYDSENGFWCRVCRECYEGRPGYNDSNGLIRSRFQTFETFRKPLADKR 228
Query: 531 LLYQLRESLLHRHVDKLWSFSMNSSSL 451
+ LR S + +++LW+ S N S L
Sbjct: 229 RIEFLRLSKRMKKLEELWT-SENVSML 254
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 597 PHQLRQTTQSFLLWHKERADRRLLYQLRESLLHRHVDK 484
P Q+++ + + H ERA+ +L + ESLL + DK
Sbjct: 184 PEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDK 221
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Frame = -2
Query: 774 PYTRLPWMFCLLEKSHQIQSSR-----GINHFLHEYALLLQQT--QSNHHGLW 637
P+ R W + +L+++H I++ R + +F E+ LLL T Q+N LW
Sbjct: 563 PFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELW 615
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 437 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 303
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 591 QLRQTTQSFLLWHKERADRRLLYQLRESL---LHRHVDKLWS 475
Q+RQT + + + R DR+ + QL SL L H++ L S
Sbjct: 1005 QIRQTDAANTFYSRHRHDRQKIMQLSNSLQNELKEHINSLES 1046
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 63 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 173
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 313 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 429
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 377 PTGIRIGEPESSTGCPRTKPSVPSMAMV 294
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,438
Number of Sequences: 5004
Number of extensions: 72677
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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