Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0837
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.21 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 813 ATRARAPGGSFI*PYTRLPWMFCLLEKSHQIQSSRGINHFLHEYALLLQQTQSNHH 646
           A  ++ P    I P + +  M  LL++   I S   +  F+ +++L LQQ Q  HH
Sbjct: 54  APPSQNPSQMMISPASGIHQMQQLLQQ--HILSPTQLQSFMQQHSLYLQQQQQQHH 107


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 100
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 649 PWALATLLISSIINTV 602
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 549 ERADRRLLYQLRESLLHRHVDKLWSFSMNSSSL-VGGDGTTL 427
           +R D  ++YQ  +   HR   K +   +  S L V G+  T+
Sbjct: 209 DRGDALIIYQNSDDSFHRLTSKTFDNDLRYSELAVAGESFTV 250


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 100
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 544 SRSTTFIPVTRIPAAQTCRQTLELQHE 464
           S S T +P+T +PA+ T   ++ ++ +
Sbjct: 848 SMSGTTVPITSLPASSTSINSITVEKD 874


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,543
Number of Sequences: 438
Number of extensions: 5078
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)