Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0836
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   127   1e-30
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    48   1e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    36   0.005
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   3.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   4.9  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.9  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   6.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.6  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  127 bits (307), Expect = 1e-30
 Identities = 60/81 (74%), Positives = 68/81 (83%)
 Frame = +1

Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
           LEVAQH+GENTVRTIAMDGTEGLVRG  V+D+GSPI IPVG  TLGRI+NVIGEP+DERG
Sbjct: 94  LEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERG 153

Query: 436 PIPTDKTAAIHAEAPEFVDMS 498
           PI   K + IHA+AP F + S
Sbjct: 154 PIKAVKYSPIHADAPSFEEQS 174



 Score =  102 bits (245), Expect = 5e-23
 Identities = 52/78 (66%), Positives = 55/78 (70%)
 Frame = +3

Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTP 689
           IL TGIKVVDLLAPYA               TV I ELINN+AKAHGGYSVF GVGERT 
Sbjct: 179 ILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTR 238

Query: 690 EGNDLYHEMIESGVISLK 743
           EGNDLY EM E+GVI L+
Sbjct: 239 EGNDLYREMQETGVIKLE 256



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 182 DVQFED--NLPPILNALEVQ 235
           D QFED  +LP ILNALEV+
Sbjct: 66  DCQFEDADSLPSILNALEVK 85


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +1

Query: 262 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 438
           +A +L  +TV  +   G + LVR G+ V  +   + +PVG   LGR+++ +G PID +GP
Sbjct: 90  MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148

Query: 439 IPTDKTAAIHAEAP 480
           I T +   +  +AP
Sbjct: 149 IKTTERRRVQLKAP 162


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 256 LEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDER 432
           LEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+ N  G PID +
Sbjct: 64  LEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID-K 118

Query: 433 GP 438
           GP
Sbjct: 119 GP 120


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 597 PHQLRQTTQSFLLWHKERADRRLLYQLRESLLHRHVDK 484
           P Q+++  +  +  H ERA+ +L  +  ESLL +  DK
Sbjct: 184 PEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDK 221


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 437 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 303
           G R++ G+P  +    R+++ PT I    PES       K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = -1

Query: 699 HFLQEYALLLQQTQSNHHGLW----QHC*SVP*SIQFCPHQLRQTTQSFLLWHKERADRR 532
           H + +  L +  T  + +G W    + C             +R   Q+F  + K  AD+R
Sbjct: 169 HSMYQIKLSIHATYDSENGFWCRVCRECYEGRPGYNDSNGLIRSRFQTFETFRKPLADKR 228

Query: 531 LLYQLRESLLHRHVDKLWSFSMNSSSL 451
            +  LR S   + +++LW+ S N S L
Sbjct: 229 RIEFLRLSKRMKKLEELWT-SENVSML 254


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 591  QLRQTTQSFLLWHKERADRRLLYQLRESL---LHRHVDKLWS 475
            Q+RQT  +   + + R DR+ + QL  SL   L  H++ L S
Sbjct: 1005 QIRQTDAANTFYSRHRHDRQKIMQLSNSLQNELKEHINSLES 1046


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 63  NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 173
           NPF N ++S+++MP      L+NLQE + +   P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 313 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 429
           T GL  G PV  +G P+ + +G      I + I  P+ +
Sbjct: 77  TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 377 PTGIRIGEPESSTGCPRTKPSVPSMAMV 294
           P G  +G PES+      KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,125
Number of Sequences: 5004
Number of extensions: 65456
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)