Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0836
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   144   8e-35
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    49   4e-06
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    49   4e-06
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    37   0.017
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    32   0.37 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.49 
Z78200-8|CAB01583.2|  368|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    29   2.6  
Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    29   4.6  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    28   6.1  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  144 bits (348), Expect = 8e-35
 Identities = 72/101 (71%), Positives = 81/101 (80%)
 Frame = +1

Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
           LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+NVIGEPIDERG
Sbjct: 106 LEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERG 165

Query: 436 PIPTDKTAAIHAEAPEFVDMSVQQGFS*LV*KSSICSLLMP 558
           PI +   AAIHAEAPEFV+MSV+Q    LV    +  LL P
Sbjct: 166 PIASKNFAAIHAEAPEFVEMSVEQEI--LVTGIKVVDLLAP 204



 Score =  118 bits (283), Expect = 6e-27
 Identities = 60/78 (76%), Positives = 60/78 (76%)
 Frame = +3

Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTP 689
           ILVTGIKVVDLLAPYA               TVLIMELINNVAKAHGGYSVFAGVGERT 
Sbjct: 191 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 250

Query: 690 EGNDLYHEMIESGVISLK 743
           EGNDLYHEMIE GVI LK
Sbjct: 251 EGNDLYHEMIEGGVIDLK 268



 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +2

Query: 182 DVQFEDNLPPILNALEVQNRSPRLDL 259
           DVQF++NLPPILN LEV  RSPRL L
Sbjct: 81  DVQFDENLPPILNGLEVVGRSPRLIL 106


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +1

Query: 262 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 441
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 442 PTDKTAAIHAEAPEFVD-MSVQQ 507
              + + +  +AP  +  +SV++
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVRE 145


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +1

Query: 262 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 441
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 442 PTDKTAAIHAEAPEFVD-MSVQQ 507
              + + +  +AP  +  +SV++
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVRE 172


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 274 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 441
           + +N       +GT G+     + + +G  +R PV  + LGRI N  G+PID+  P+
Sbjct: 71  ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 349 SGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 450
           +G   R PV  + LGRI N  G+PID+  P+ P D
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 313 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 429
           T G+  G PVL +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>Z78200-8|CAB01583.2|  368|Caenorhabditis elegans Hypothetical
           protein T04H1.6 protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 494 CLCSRDSRNWYKSRRSARSLCQRRKDWVVWRSWCG--QNCIDYGTDQQCC 637
           CL   D  N  +  R    LC+ +K  V    WC    +C D G+D++ C
Sbjct: 319 CLNGEDEMNCKQEGRQKYLLCENQKQSVTRLQWCNGETDCAD-GSDEKYC 367


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 307 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 483
           D  +G + G+P+ +D G  ++ P G E + ++ N  GEP+DE         A I +   E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209

Query: 484 FVDMSV 501
             +++V
Sbjct: 210 HAELTV 215


>Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.5 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 593 CGQNCIDYGTDQQCCQSPW 649
           C   C+ Y TDQ+CC+  +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186


>Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.3 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 593 CGQNCIDYGTDQQCCQSPW 649
           C   C+ Y TDQ+CC+  +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 266 ATSSRGGEIDFAPQGHLESEAGYLRIAHLPQHR*RQQPY 150
           AT+   G +   P  H  + + +L + H+P++    +PY
Sbjct: 204 ATTDHSGTVIVGPMNHYSTWSAFLELKHVPKNEKTGKPY 242


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 406 VIGEPIDERGPIPTDKTAAIHAEAPEFVD-MSVQQ 507
           V+G PID +GPI   + + +  +AP  +  +SV++
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVRE 137


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/91 (25%), Positives = 34/91 (37%)
 Frame = -2

Query: 494 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPS 315
           + T  G +A  +A     M  RS    P+T M  P  +         P  S+  PR    
Sbjct: 9   LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68

Query: 314 VPSMAMVRTVFSPKCWATSSRGGEIDFAPQG 222
            P+ A  +T  +P   + S+       AP G
Sbjct: 69  TPTAAPPKTC-APPVRSASTVAAAAAAAPPG 98


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/91 (25%), Positives = 34/91 (37%)
 Frame = -2

Query: 494 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPS 315
           + T  G +A  +A     M  RS    P+T M  P  +         P  S+  PR    
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197

Query: 314 VPSMAMVRTVFSPKCWATSSRGGEIDFAPQG 222
            P+ A  +T  +P   + S+       AP G
Sbjct: 198 TPTAAPPKTC-APPVRSASTVAAAAAAAPPG 227


>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -2

Query: 293 RTVFSPKCWATSSR----GGEIDFAPQGHLESEAGYLRI-AHLPQHR 168
           + +FS  CW+ SSR     GE+D AP  H +  +G + I   L +H+
Sbjct: 189 KVMFSNLCWSRSSRINGADGEMDNAPGNHDQILSGTVEIQTQLLEHQ 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,495,029
Number of Sequences: 27780
Number of extensions: 382242
Number of successful extensions: 1099
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)