Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0836
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 118 5e-27
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 118 5e-27
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 118 5e-27
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 44 8e-05
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 36 0.037
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 36 0.037
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 36 0.037
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 36 0.037
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 36 0.037
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 31 0.61
At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical... 30 1.9
At4g34340.1 68417.m04880 expressed protein 29 3.3
At4g04070.1 68417.m00576 hypothetical protein low similarity to ... 28 5.7
At3g59410.1 68416.m06626 protein kinase family protein low simil... 28 7.5
At2g02650.1 68415.m00204 reverse transcriptase-related similar t... 28 7.5
At1g47730.1 68414.m05306 F-box family protein contains Pfam PF00... 28 7.5
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 9.9
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 9.9
At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot... 27 9.9
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 118 bits (283), Expect = 5e-27
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +1
Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
LEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+NV+GEPIDERG
Sbjct: 122 LEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERG 181
Query: 436 PIPTDKTAAIHAEAPEFVDMSVQQ 507
I T+ IH +AP VD++ Q
Sbjct: 182 EIKTEHYLPIHRDAPALVDLATGQ 205
Score = 109 bits (261), Expect = 3e-24
Identities = 56/77 (72%), Positives = 57/77 (74%)
Frame = +3
Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTP 689
IL TGIKVVDLLAPY TVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 207 ILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 266
Query: 690 EGNDLYHEMIESGVISL 740
EGNDLY EMIESGVI L
Sbjct: 267 EGNDLYREMIESGVIKL 283
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +2
Query: 182 DVQFEDN--LPPILNALEVQNRSPRLDL 259
DV+FED LPPI+ +LEVQ+ RL L
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVL 122
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 118 bits (283), Expect = 5e-27
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +1
Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
LEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+NV+GEPIDERG
Sbjct: 125 LEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERG 184
Query: 436 PIPTDKTAAIHAEAPEFVDMSVQQ 507
I T+ IH +AP VD++ Q
Sbjct: 185 EIKTEHYLPIHRDAPALVDLATGQ 208
Score = 109 bits (261), Expect = 3e-24
Identities = 56/77 (72%), Positives = 57/77 (74%)
Frame = +3
Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTP 689
IL TGIKVVDLLAPY TVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 210 ILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 269
Query: 690 EGNDLYHEMIESGVISL 740
EGNDLY EMIESGVI L
Sbjct: 270 EGNDLYREMIESGVIKL 286
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +2
Query: 182 DVQFEDN--LPPILNALEVQNRSPRLDL 259
DV+FED LPPI+ +LEVQ+ RL L
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVL 125
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 118 bits (283), Expect = 5e-27
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +1
Query: 256 LEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERG 435
LEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+NV+GEPIDERG
Sbjct: 122 LEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERG 181
Query: 436 PIPTDKTAAIHAEAPEFVDMSVQQ 507
I T+ IH +AP VD++ Q
Sbjct: 182 EIKTEHYLPIHRDAPALVDLATGQ 205
Score = 109 bits (261), Expect = 3e-24
Identities = 56/77 (72%), Positives = 57/77 (74%)
Frame = +3
Query: 510 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTP 689
IL TGIKVVDLLAPY TVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 207 ILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 266
Query: 690 EGNDLYHEMIESGVISL 740
EGNDLY EMIESGVI L
Sbjct: 267 EGNDLYREMIESGVIKL 283
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +2
Query: 182 DVQFEDN--LPPILNALEVQNRSPRLDL 259
DV+FED LPPI+ +LEVQ+ RL L
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVL 122
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +1
Query: 262 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 441
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 442 PTDKTAAIHAEAPEFVD 492
+ + +AP ++
Sbjct: 394 SDHEQRRVEVKAPGILE 410
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 RLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDE 429
R +V + GE V + +GT G+ + +G ++ PV + LGRI N G+PID
Sbjct: 56 RGQVLEVDGEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 114
Query: 430 RGPI 441
PI
Sbjct: 115 GPPI 118
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 RLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDE 429
R +V + GE V + +GT G+ + +G ++ PV + LGRI N G+PID
Sbjct: 56 RGQVLEVDGEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 114
Query: 430 RGPI 441
PI
Sbjct: 115 GPPI 118
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 35.5 bits (78), Expect = 0.037
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 244 SPPRLEVAQHLGENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEP 420
S R +V + GE V + +GT G+ + V +G ++ PV + LGRI N G+P
Sbjct: 52 STRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKP 110
Query: 421 IDERGPI 441
ID PI
Sbjct: 111 IDNGPPI 117
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 35.5 bits (78), Expect = 0.037
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 244 SPPRLEVAQHLGENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEP 420
S R +V + GE V + +GT G+ + V +G ++ PV + LGRI N G+P
Sbjct: 52 STRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKP 110
Query: 421 IDERGPI 441
ID PI
Sbjct: 111 IDNGPPI 117
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 35.5 bits (78), Expect = 0.037
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 244 SPPRLEVAQHLGENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEP 420
S R +V + GE V + +GT G+ + V +G ++ PV + LGRI N G+P
Sbjct: 52 STRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKP 110
Query: 421 IDERGPI 441
ID PI
Sbjct: 111 IDNGPPI 117
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 647 MGFGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRSEQIDDFYTSYENPCCTDMSTNSGAS 471
MGF +I+ + + + TSS N S G+ +Q+D+ Y +Y C D +S S
Sbjct: 272 MGFPHIIRISRHPHRISFTSSLPPGNFSC-GVCRQQVDNNYGAYSCEICDDYFVHSKCS 329
>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
ethylene-insensitive3 GI:2224933 from [Arabidopsis
thaliana]
Length = 628
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 394 RIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQGFS*LV*KSSICSLLMP 558
R +N + +PID G +P D I +E D +VQ + +V ++ SLL P
Sbjct: 455 RPVNSVAQPIDLTGIVPEDGQKMI-SELMSMYDRNVQSNQTSMVMENQSVSLLQP 508
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 441 DGTTLVNRFADYIDDATEGFSSHRDTNW 358
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At4g04070.1 68417.m00576 hypothetical protein low similarity to
protective antigen [Streptococcus pyogenes] GI:8996050,
fibrinogen-binding protein [Streptococcus equi]
GI:3093478
Length = 728
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -2
Query: 521 SYENPCCTDMSTNSGASA*IAA----VLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGE 354
S +P +++T + A+A + + L G+GP + SPI M P + P +
Sbjct: 307 SASHPSLPEVNTGTSAAAVVRSDVHRPLRRGLGPSRRVTSPIEQRMEPAAATPEATASAD 366
Query: 353 PESS 342
+SS
Sbjct: 367 RQSS 370
>At3g59410.1 68416.m06626 protein kinase family protein low
similarity to GCN2 eIF2alpha kinase [Mus musculus]
GI:6066585; contains Pfam profiles PF03129: Anticodon
binding domain, PF00069: Protein kinase domain
Length = 1241
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 609 IQFCPHQLRQTTQSFLLWHKERADRRLLYQLRESLLHRH 493
+++CP LRQ +S+ + K+ A L+ Q+ E L H H
Sbjct: 541 MEYCPRTLRQVFESYNHFDKDFA-WHLIRQIVEGLAHIH 578
>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278
Length = 365
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 572 WVVWRSWCGQNCIDYGTDQQCCQSP 646
W++WR W +N + QQ CQSP
Sbjct: 142 WIMWRLWKSRNVFLF---QQKCQSP 163
>At1g47730.1 68414.m05306 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; identical to
hypothetical protein GB:AAD46016 GI:5668790 from
(Arabidopsis thaliana)
Length = 391
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 581 KQPNLSSFGIRSEQIDDFYTSYENPCCTDMSTNS 480
+ PN S SE ID ++T+Y CC T S
Sbjct: 91 QNPNESYSYSSSEIIDSYHTTYPKRCCVTTLTES 124
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 HPNVGLPQVEAGRSILHLKGI*NR 209
HP++ +P+ EAG+S H + NR
Sbjct: 595 HPHLSIPETEAGKSRKHYNRLINR 618
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 394 DRGFQLP-PGYELVSQSLVRVAHGLSLQYRPWQWSELCSHPNVGLPQ 257
D+ Q P P V+ + R + GLS+QYR + LC+ PN+ + Q
Sbjct: 295 DQTSQYPSPASSAVTATSARSSLGLSIQYR---GASLCTPPNIFVDQ 338
>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
/ VPS11 family protein similar to Vacuolar protein
sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
sapiens]; similar to Vacuolar biogenesis protein END1
(PEP5 protein) (Vacuolar protein sorting 11)
(Swiss-Prot:P12868) [Saccharomyces cerevisiae]
Length = 932
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 247 PPRLEVAQHLGENTVRTIAMDGTEGLVRGQP 339
PP+L+ H+G +V T+ M L+ G+P
Sbjct: 211 PPKLQTLDHIG-GSVNTVTMSDRSELIVGRP 240
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,132
Number of Sequences: 28952
Number of extensions: 362937
Number of successful extensions: 1070
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -