Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0835
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    32   0.077
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   1.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   2.2  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   3.8  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.8  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
 Frame = +1

Query: 256  LISEKVNFDKLRNCVEKLGIRSTEIISKEVNVEDLLKKI-ITNSDYEGLI-------SEI 411
            L S +   D L+N  E +    TEI  K    +DL  K+ + +S+YE L+         +
Sbjct: 1010 LASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSL 1069

Query: 412  AAKANLLKLVPCDCKHIEQIDKEDDVVNPQIE 507
              K N LK +    K+++++  E D  N ++E
Sbjct: 1070 EDKTNQLKYIE---KNVQKLLDEKDQRNVELE 1098


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 268 KVNFDKLRNCVEKLGIRSTEIISKEV 345
           KVNFD+  +C++ LG+ + E++ +EV
Sbjct: 262 KVNFDRYVHCIKNLGL-TDELVLREV 286


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +2

Query: 8    ERDTHNLQREVGKLREAVEEKDVNLDKFTSXXXXXXXXXXXXXXXXXTNHNIA----NRL 175
            E     L+ ++  L E + +K+ + + F +                    NI     N+L
Sbjct: 749  ESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKL 808

Query: 176  QDLEQKTQELKSQKKVDTETIQTLQK 253
             +   + QEL+SQ   D   I+TL +
Sbjct: 809  SEESTRLQELQSQLNQDKNQIETLNE 834


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 357 IFYVNFFGYYFCRTYTKFLYTI 292
           + ++NFF +Y CR    F +T+
Sbjct: 34  VIFINFFFFYLCRCCVYFYHTL 55


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 522 LIALQASLESSQAENAKLQVNIATLNSQNGSLISQQMTLQL 644
           L ALQA LE   AEN   Q  I +L  Q  S   + + LQL
Sbjct: 523 LFALQAKLELLSAENEYFQSQITSL-YQESSFQKRLLMLQL 562


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 528 ALQASLESSQAENAKLQVNIATLNSQ 605
           +L++SL +SQAE    Q  I  LNSQ
Sbjct: 570 SLESSLTNSQAECVSFQEKINELNSQ 595


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +1

Query: 289 RNCVEKLGIRSTEIISKEVNVEDLLKKII-TNSDYEGLISEIAAKANLLKLVPCDCK-HI 462
           R+   K  IR  E+  ++++  D L+ +  TN+  +  ISE  A+ N +     + + H+
Sbjct: 516 RSAFLKSQIRDQELTIEKLH--DSLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHL 573

Query: 463 EQIDKEDDVVNPQIERS 513
           E  +KE++++  Q+E S
Sbjct: 574 ETANKENEILKQQLELS 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,120
Number of Sequences: 5004
Number of extensions: 39623
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)