Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0835
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355...    28   9.2  

>12_01_0450 -
           3552701-3552865,3552971-3553195,3553306-3553473,
           3554514-3554629,3554735-3554887,3554978-3555121,
           3556667-3557276
          Length = 526

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +1

Query: 226 H*NYTDTAESLISEKVNFDKLRN---CVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEG 396
           H N  +  E+L+S    FDK  +    +++L     +    +V++ED++K +  N+D + 
Sbjct: 417 HMNKLEREENLVSAFTFFDKDGSGFITIDELSQACEQFGLSDVHLEDMIKDVDQNNDGQI 476

Query: 397 LISEIAA 417
             SE AA
Sbjct: 477 DYSEFAA 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,301
Number of Sequences: 37544
Number of extensions: 208590
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)