Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0835
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    30   1.5  
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z83108-3|CAB05511.1|  457|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   6.2  
Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 155 HNIANRLQDLEQKTQELKSQKKVDTETIQTLQK 253
           + I N LQD EQ+  E K Q++ D   ++TL K
Sbjct: 265 NEINNILQDAEQRVAETKKQEEHDAAELRTLMK 297


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
 Frame = -2

Query: 446 HGTNFSKFALAAISDIKPS*SLFVIIFFNRSSTL----TSLD-----IISVERIPSFSTQ 294
           HG   S+F + A S+I    ++F+ +  NR STL    ++ D     I S  R  +  T 
Sbjct: 57  HGLRLSEFPIEAFSNIALLDTVFLDLHDNRMSTLPADFSAFDCLISCIASSNRFRTIPTC 116

Query: 293 FLNLSKLTFSDIKLSAVS 240
             +L +LTF D   + +S
Sbjct: 117 ICSLEQLTFIDFSSNDIS 134


>Z83108-3|CAB05511.1|  457|Caenorhabditis elegans Hypothetical
           protein F44E5.3 protein.
          Length = 457

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 271 VNFDKLRNCVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEGLISEI 411
           +N  KL  C+ ++GI S E +SK  N+E L+   +   DY+  IS+I
Sbjct: 179 LNLTKL--CISRIGINSLEGLSKLKNLETLIMCDMEFEDYQD-ISDI 222


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 495 INYIILFVNLFYMFAITWY*FQ*VCFGCNFRY*TFIITVCDNFFQ*IFYVNFFGY--YFC 322
           I+ IILF+N ++++  +W        G  F Y    I +    F  IFY+ F  Y  Y+C
Sbjct: 569 ISLIILFINFYFLY--SW-------IGSTFGYNAVSIPI--TIFCAIFYIIFIAYLTYYC 617

Query: 321 RTYTKFLYTI 292
               +F+  I
Sbjct: 618 LVAMEFISPI 627


>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 204 NSWVFCSRSCNLLAI 160
           N+W+FCS +C L AI
Sbjct: 209 NNWIFCSGTCTLYAI 223


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 161 IANRLQDLEQKTQELKSQKKVDTETIQTLQK 253
           I NRL +L++ T+E+K   +V  E +Q +Q+
Sbjct: 177 IENRLIELDKYTEEMKEIARVHREQLQQIQE 207


>AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical
           protein F57B10.1 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 531 LQASLESSQAENAKLQVNIATLNSQNGSLISQQMTLQLANSQLA 662
           L+  +  S  EN  L+  I  L+S+N S+ISQ   LQ    Q A
Sbjct: 312 LEDRVSESTKENQALKQQIERLSSENQSVISQLKKLQAQLGQNA 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,653
Number of Sequences: 27780
Number of extensions: 227694
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)