Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0835
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.44 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.3  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 277 FDKLRNCVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEGLISEIAAKANLLKLVPCDCK 456
           FDK R+      ++  +   + V V+D L K I +SD      EIA K ++     C   
Sbjct: 47  FDKFRS--GDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTREIAEKLHVSH--TCIEN 102

Query: 457 HIEQI 471
           H++Q+
Sbjct: 103 HLKQL 107


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 343 VNVEDLLKKIITNSDYEGLISEIAAKANLLKLVP 444
           +++ D+++ I T++ Y G   +I  + N  +L+P
Sbjct: 12  IHMSDVIEVIETDTKYNGREDQIPREMNTERLLP 45


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 343 VNVEDLLKKIITNSDYEGLISEIAAKANLLKLVP 444
           +++ D+++ I T++ Y G   +I  + N  +L+P
Sbjct: 12  IHMSDVIEVIETDTKYNGREDQIPREMNTERLLP 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,532
Number of Sequences: 438
Number of extensions: 2419
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)