Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0835
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27230.1 68418.m03248 expressed protein  ; expression support...    33   0.20 
At5g46990.1 68418.m05792 invertase/pectin methylesterase inhibit...    32   0.36 
At2g40160.1 68415.m04939 expressed protein                             30   1.9  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    29   2.5  
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu...    29   2.5  
At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family pr...    29   4.4  
At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family pr...    29   4.4  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    28   5.8  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    28   5.8  
At1g17540.1 68414.m02157 protein kinase-related similar to serin...    28   7.7  

>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
 Frame = +1

Query: 235 YTDTAESLISEKVNFDKLRNCVEKLGIRSTEIISKEVNVEDLLKKIIT----NSDYEGLI 402
           +T   ES+  E+V+ +KL     +LG+R+TE+  K   VE   ++I+       ++E L+
Sbjct: 123 FTTRMESV--ERVSDEKLM----ELGLRATELELKMEEVEKHRERIVAGDKLRGEFEPLV 176

Query: 403 SEIAAKANLLKLVPCDCKHIEQIDKEDDVVNPQIERSRQI 522
           S +A    L   +P  C  +   +  D++V      +R +
Sbjct: 177 SLLAKNMGLSVTMPVKCSTLYLNENADEMVKKNTALARMV 216


>At5g46990.1 68418.m05792 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 187

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 259 ISEKVNFDKLRNCVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEGLISE 408
           ISE     K+RN  E +G+     IS   NV+ ++++I+ +  Y   +SE
Sbjct: 50  ISENPESQKVRNIDELIGVGVKNAISNMTNVKGIVERILKDRKYTSKMSE 99


>At2g40160.1 68415.m04939 expressed protein
          Length = 427

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   FSERDTHNLQREVGKLREAVEEKDVNLD 85
           F E +THNLQ  +  L+++ E+KD   D
Sbjct: 43  FQEFNTHNLQEHITPLQQSKEDKDKKTD 70


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 437  NFSKFALAAISDIKPS*SLFVIIFFNRSSTLTSLDIISVERIPSFSTQFLNLSK 276
            + +K A AAI    P+  + + +   R + LT+LD+I          QFL++S+
Sbjct: 1558 SMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSE 1611


>At1g80010.1 68414.m09362 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 696

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -3

Query: 652 LLASCNVICCEINDPFCEFSVAIFTCNLAFSA*LLSREACKAIRSAVSVQFED*LHHPLC 473
           +L  C ++  +  + +     A  TC L     +   E CKA+R+AVS  F    H    
Sbjct: 321 ILLGCGLLADQSFETYVWLFRAWLTCMLGRPPQIFITEQCKAMRTAVSEVFPRAHHRLSL 380

Query: 472 QFVLY-VCNHMVLISVSLLW 416
             VL+ +C  +V +  S L+
Sbjct: 381 THVLHNICQSVVQLQDSDLF 400


>At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor (JAF13)
           GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
           PF00010 Helix-loop-helix DNA-binding domain
          Length = 596

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 173 LQDLEQKTQELKS-QKKVDTETIQTLQK 253
           LQDL+++ QEL+S ++  DTET  T+ K
Sbjct: 447 LQDLQKRVQELESCRESADTETRITMMK 474


>At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor (JAF13)
           GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
           PF00010 Helix-loop-helix DNA-binding domain
          Length = 596

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 173 LQDLEQKTQELKS-QKKVDTETIQTLQK 253
           LQDL+++ QEL+S ++  DTET  T+ K
Sbjct: 447 LQDLQKRVQELESCRESADTETRITMMK 474


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 253 SLISEKVNFDKLRNCVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEGLISEI-AAKANL 429
           + +SE  N   L  CVE L   S+     EVN+ED     + +S  + L+ +  A+  N+
Sbjct: 729 AFLSEVSNVSPLHVCVEVLFENSSAEPILEVNLEDEESMKVADSSEQTLVGKANASYNNI 788

Query: 430 LKLVPCD 450
             L+P +
Sbjct: 789 PTLIPME 795


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 253 SLISEKVNFDKLRNCVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEGLISEI-AAKANL 429
           + +SE  N   L  CVE L   S+     EVN+ED     + +S  + L+ +  A+  N+
Sbjct: 729 AFLSEVSNVSPLHVCVEVLFENSSAEPILEVNLEDEESMKVADSSEQTLVGKANASYNNI 788

Query: 430 LKLVPCD 450
             L+P +
Sbjct: 789 PTLIPME 795


>At1g17540.1 68414.m02157 protein kinase-related similar to
           serine/threonine protein kinase Fen [Lycopersicon
           esculentum] GI:1809259
          Length = 733

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 295 CVEKLGIRSTEIISKEVNVEDLLKKIITNSDYEGLISEIAAKANLLK 435
           C  K GI +TE++  ++++   +   ITN+    ++   +A+ + LK
Sbjct: 77  CARK-GIIATEVLLHDIDISSAIVDYITNNSISNIVIGASARNSFLK 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,449
Number of Sequences: 28952
Number of extensions: 190968
Number of successful extensions: 580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)