Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0834
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   9.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.0  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 585 PGMPCSIIMHHLVQGQSV 532
           P    SI+MHHLV  QS+
Sbjct: 251 PAPTSSIMMHHLVNPQSL 268


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -1

Query: 633 FHYPHVVDLRASQGYFPGMPCSIIMHHLVQGQSVPLLLPKQLLPYVNVRF 484
           +HY        S+   P  P  +  HH    Q  P++  +  L Y N+ +
Sbjct: 42  YHYEDPYGYTGSEET-PPSPQEVYYHHQTIPQDNPIINTETGLSYTNLDY 90


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 361 VLGPPGAGKTT 393
           +LG  GAGKTT
Sbjct: 109 ILGSSGAGKTT 119


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 361 VLGPPGAGKTT 393
           +LG  GAGKTT
Sbjct: 109 ILGSSGAGKTT 119


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -1

Query: 633 FHYPHVVDLRASQGYFPGMPCSIIMHHLVQGQSVPLLLPKQLLPYVNVRF 484
           +HY        S+   P  P  +  HH    Q  P++  +  L Y N+ +
Sbjct: 42  YHYEDPYGYTGSEET-PPSPQEVYYHHQTIPQDNPIINTETGLSYTNLDY 90


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -1

Query: 633 FHYPHVVDLRASQGYFPGMPCSIIMHHLVQGQSVPLLLPKQLLPYVNVRF 484
           +HY        S+   P  P  +  HH    Q  P++  +  L Y N+ +
Sbjct: 42  YHYEDPYGYTGSEET-PPSPQEVYYHHQTIPQDNPIINTETGLSYTNLDY 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,078
Number of Sequences: 336
Number of extensions: 3536
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)