Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0834
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 69 8e-13
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 59 6e-10
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 45 1e-05
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 2.4
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 27 2.4
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 27 2.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.2
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 26 4.2
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 26 4.2
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.5
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 7.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 7.3
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 7.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 7.3
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 7.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.7
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 68.5 bits (160), Expect = 8e-13
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +1
Query: 355 QLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRE 507
Q+V+GPPG+GK+TYC M +L +GR IIVNLDPAND + Y IDIR+
Sbjct: 5 QVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRK 55
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +3
Query: 507 VIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLHGDNGTTFLFDLPG 659
V+ +E + + DLGPNGAL+Y M +E +++WLL +L + +FD PG
Sbjct: 56 VLDVEMIQKDYDLGPNGALIYAMEAIEYHVEWLLKELKKHRDSYVIFDCPG 106
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 58.8 bits (136), Expect = 6e-10
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +3
Query: 501 KGVIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLHGDNGTTFL-FDLPG 659
+ +I +++VME++D GPNG L+YC +L NLDW LN+ GD +L FD+PG
Sbjct: 55 RDLISIDDVMEELDYGPNGGLIYCFEFLMENLDW-LNEEIGDYDEDYLIFDMPG 107
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 361 VLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRE 507
V G +GK+T+C + +K++GR +VNLDPA + ++P +DIR+
Sbjct: 8 VCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRD 56
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +1
Query: 313 MTNKRFKPTQTFYGQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPD 492
MT+K KP +V+G G+GKTT+ +++ L + + I+NLDPA + Y+ +
Sbjct: 1 MTDKEKKPCAI----IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEAN 56
Query: 493 IDIRE*LFWKK 525
IDIR+ + +K+
Sbjct: 57 IDIRDTINYKE 67
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 501 KGVIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLHGDNGTT--FLFDLPG 659
+ I +EVM+Q +LGPNG ++ + + D +L L T L D PG
Sbjct: 60 RDTINYKEVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPG 114
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDP 462
+V GP G+GK+++ +++ L R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 352 GQLVLGPPGAGKTTYCIKMSDML 420
G L+ GPPG+GKT++ ++ L
Sbjct: 244 GYLLYGPPGSGKTSFLYALAGEL 266
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 352 GQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVN 453
G L+ GPPG GKT ++ ML R+ IVN
Sbjct: 306 GILLYGPPGTGKTLIARQIGKMLN--AREPKIVN 337
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 555 GALLYCMAYLESNLDWLL---NQLHGDNGTTFLF 647
G LLYCMAY +N +L+ L+G TTFL+
Sbjct: 171 GHLLYCMAY-RANWIYLILIGRMLNGIGFTTFLY 203
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 367 GPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPAND 471
G G GKTT ++ + + V++++ DPA++
Sbjct: 26 GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHN 60
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 361 VLGPPGAGKTTYCIKMSD 414
VLG PGAGK T C ++++
Sbjct: 7 VLGGPGAGKGTQCDRLAE 24
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLGRQVII 447
L+ GPPG GKT +++ L +++++
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLVLRNKRILV 258
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 256 ESL*RYHFGLQKRRYRMSAMTNKRFKPTQTFYGQLV--LGPPGAGKTT 393
E L R H+GL+ + R+ + K T G+++ +GPPG GKT+
Sbjct: 540 EVLDRDHYGLKDVKDRVLELVAVG-KLRGTMQGKIMCLVGPPGVGKTS 586
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 313 MTNKRFKPTQTFYGQL--VLGPPGAGKTTYCIKMSDML 420
MT PT Y + V+GP G+GKTT +S+ L
Sbjct: 1 MTVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKL 38
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 301 RMSAMTNKRFKPTQTFYGQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLD 459
++ A T K+ +P+ +++G G+GKTT C K++ + G + +V D
Sbjct: 90 KVDAFTPKKGRPSVI----MMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAAD 138
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 352 GQLVLGPPGAGKT 390
G L+ GPPG GKT
Sbjct: 494 GMLLFGPPGTGKT 506
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 229 LMKMQSGFDNISTVSAKNLAAA*CSSPQSSKFRLV*FKTVNMTI 98
LMK+ +G+D +T LAAA S +S R+ F VN T+
Sbjct: 202 LMKVIAGYDEENTEDYSALAAADLESIRSKALRVKQF-LVNQTV 244
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 340 QTFYGQLV--LGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDP 462
++ YG V +GP GKT+ + R I VNLDP
Sbjct: 102 ESSYGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.4 bits (53), Expect = 7.3
Identities = 5/12 (41%), Positives = 10/12 (83%)
Frame = -3
Query: 502 LCQCQVCNSWYH 467
+ +C++C+ WYH
Sbjct: 1109 MIECEICHEWYH 1120
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 352 GQLVLGPPGAGKT 390
G L+ GPPG GKT
Sbjct: 414 GMLLFGPPGTGKT 426
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNL 456
L+ GPPG GKT + M + T Q + N+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNV 1322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,538
Number of Sequences: 5004
Number of extensions: 53493
Number of successful extensions: 204
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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