Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0834
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical pr...    69   4e-12
AL033514-15|CAA22102.1|  272|Caenorhabditis elegans Hypothetical...    58   4e-09
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    42   4e-04
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      42   4e-04
Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z92827-3|CAB07328.1|  191|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...    28   5.1  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    28   5.1  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical
           protein B0207.6 protein.
          Length = 268

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = +1

Query: 349 YGQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRE 507
           YG LV+G PGAGK+T+C  ++D+     R  + +NLDPANDTM Y PD++I E
Sbjct: 2   YGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPDVNITE 54



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = +3

Query: 507 VIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLHGDNGTTFLFDLPG 659
           +I + +VM+++ LGPNGAL YC+  L +N +WLL ++  ++    + D PG
Sbjct: 55  MITVNDVMDRLGLGPNGALKYCIETLGANCNWLLQKIEANHKKYLIIDCPG 105


>AL033514-15|CAA22102.1|  272|Caenorhabditis elegans Hypothetical
           protein Y75B8A.14 protein.
          Length = 272

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +1

Query: 349 YGQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRE 507
           Y QLV+GP G+GK+TYC  M +   + GR + +VNLDPA +  NY   +D+R+
Sbjct: 3   YAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRD 55



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = +3

Query: 531 EQIDLGPNGALLYCMAYLESNLDWLLNQLHGDNGTTFLFDLPG 659
           E++ LGPNGAL++CM YL  NL+WL ++L       F+ D PG
Sbjct: 66  EELILGPNGALVFCMEYLVQNLEWLHDELDEGEDDYFVIDCPG 108


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +1

Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRE*LFWKK 525
           LVLG  G+GKTT+  +++  L        ++NLDPA   + Y  ++DIR+ + +K+
Sbjct: 34  LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKE 89



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 501 KGVIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLH--GDNGTTFLFDLPG 659
           +  +  +EVM++  +GPNGA++ C+  + +  D ++  ++    + +  L D PG
Sbjct: 82  RDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPG 136


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +1

Query: 358 LVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRE*LFWKK 525
           LVLG  G+GKTT+  +++  L        ++NLDPA   + Y  ++DIR+ + +K+
Sbjct: 34  LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKE 89



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 501 KGVIVLEEVMEQIDLGPNGALLYCMAYLESNLDWLLNQLH--GDNGTTFLFDLPG 659
           +  +  +EVM++  +GPNGA++ C+  + +  D ++  ++    + +  L D PG
Sbjct: 82  RDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPG 136


>Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical
           protein T28F3.6 protein.
          Length = 252

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 358 LVLGPPGAGKTTYCIKMSDMLK 423
           LVLGPP AGKTT C  ++D ++
Sbjct: 32  LVLGPPKAGKTTLCTFLADFME 53


>Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical
           protein F40F8.1 protein.
          Length = 191

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 361 VLGPPGAGKTTYCIKMSDML 420
           VLGPPG+GK T C K+ + L
Sbjct: 7   VLGPPGSGKGTICAKIQENL 26


>AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7b protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 129 NLNFDDCGEEHQAAARFLAETVDILSKPLCIFINLRSYDI 248
           NL  D+CG ++  A++  + TVD+ S P+ I    +S ++
Sbjct: 77  NLKSDECGIKYDVASKTYSVTVDVHSHPVLIVEGDKSVNV 116


>AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7a protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 129 NLNFDDCGEEHQAAARFLAETVDILSKPLCIFINLRSYDI 248
           NL  D+CG ++  A++  + TVD+ S P+ I    +S ++
Sbjct: 77  NLKSDECGIKYDVASKTYSVTVDVHSHPVLIVEGDKSVNV 116


>Z92827-3|CAB07328.1|  191|Caenorhabditis elegans Hypothetical
           protein C29F7.3 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 361 VLGPPGAGKTTYCIKMSDML 420
           VLGPPG+GK T C ++ + L
Sbjct: 7   VLGPPGSGKGTICTQIHENL 26


>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 367 GPPGAGKTTYCIKMSDMLKTLGRQVIIVNLDPAND 471
           G  G GKTT    ++  L  +  +V++++ DPA++
Sbjct: 25  GKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHN 59


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 439  LAYLMFLACQTFLYNMWFSQLQEDQ 365
            L Y++FLA Q F+Y +W    + DQ
Sbjct: 1372 LVYVIFLAVQGFIYWIWVFMRENDQ 1396


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 352 GQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVN 453
           G L+ GPPG GKT    ++  ML    R+  IVN
Sbjct: 332 GILLFGPPGTGKTLMARQIGKMLN--AREPKIVN 363


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 352 GQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVN 453
           G L+ GPPG GKT    ++  ML    R+  IVN
Sbjct: 332 GILLFGPPGTGKTLMARQIGKMLN--AREPKIVN 363


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 352 GQLVLGPPGAGKTTYCIKMSDMLKTLGRQVIIVN 453
           G L+ GPPG GKT    ++  ML    R+  IVN
Sbjct: 266 GILLFGPPGTGKTLMARQIGKMLN--AREPKIVN 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,784
Number of Sequences: 27780
Number of extensions: 293502
Number of successful extensions: 707
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)