Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0832
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 436 PSCFVC*ILTEWKIYI 483
           P CFVC  L  W IY+
Sbjct: 413 PVCFVCFNLMYWIIYL 428


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 436 PSCFVC*ILTEWKIYI 483
           P CFVC  L  W IY+
Sbjct: 413 PVCFVCFNLMYWIIYL 428


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 529 GKCLKTYTGHKNEKYCIFAN 588
           G+ +    GH+  +YC+F N
Sbjct: 517 GEVVTGVIGHRMPRYCLFGN 536


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 529 GKCLKTYTGHKNEKYCIFAN 588
           G+ +    GH+  +YC+F N
Sbjct: 517 GEVVTGVIGHRMPRYCLFGN 536


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 436 PSCFVC*ILTEWKIY 480
           P CFVC  L  W IY
Sbjct: 351 PVCFVCFNLMYWIIY 365


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 263 DVRTGKCLKPLPAHSDPVSAVHFNRDGSLIVSSS 364
           ++RT  CL P P   +  ++   +R+G  I   S
Sbjct: 622 ELRTLPCLLPRPKSENNFASQELSREGRRIFHKS 655


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 666 GDCTEVVWTHGYSSLHGLPP 725
           GD  +V W  G +S  GL P
Sbjct: 327 GDVQDVPWVTGVTSEEGLYP 346


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 263 DVRTGKCLKPLPAHSDPVSAVHFNRDGSLIVSSS 364
           ++RT  CL P P   +  ++   +R+G  I   S
Sbjct: 590 ELRTLPCLLPRPKSENNFASQELSREGRRIFHKS 623


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 666 GDCTEVVWTHGYSSLHGLPP 725
           GD  +V W  G +S  GL P
Sbjct: 327 GDVQDVPWVTGVTSEEGLYP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,978
Number of Sequences: 438
Number of extensions: 4837
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)