Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0831
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    32   0.089
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    29   0.63 
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    28   1.1  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   1.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.3  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.4  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    26   4.4  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   4.4  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   5.8  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   7.7  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   7.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.7  

>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -3

Query: 562 STDDSSNFVLPVAASVSIPMPTLDPGGRSRSYHP-RLQLHA*SGSNRIYQNS--QQMDGI 392
           S  D+SN + P  +S SIP+P +   G S   HP R  L +   SNRI ++   ++ D +
Sbjct: 125 SPSDTSNLLHPPTSSSSIPIP-IKNAGHSNLDHPIRPSLQSSISSNRIIKSPGIKEDDYM 183

Query: 391 HLNPSNQDP 365
           H   S   P
Sbjct: 184 HRGRSISSP 192


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 346 PYNETLVDPDYWDLDEFHPSAANFDKFDWTLTKRVAAVSGDNFLIS 483
           P   T+  P  +   E  PS ++ D     LT R AAV G +FL+S
Sbjct: 120 PIEATIPAPSPYLFSEPLPSISSLDLDVLRLTARYAAVRGSSFLVS 165


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 512 YTNANFRPRGEIKKLSPETAATRLVRVQSNLSKFAADGW 396
           Y +    PRGEI    P      L R + N   F  DGW
Sbjct: 475 YNSHGHPPRGEIWLRGPSLTRGYLNRDKENKESFTPDGW 513


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 146 PESKKNEAQGNFMIVVLLIKMNLR*LNLSK--VILVRIDPLH 27
           P S +N A GNFM+ V     N R L   K  V+L    P+H
Sbjct: 69  PHSPRNSAMGNFMVSVDFQDRNQRSLKQVKRTVLLPHRSPIH 110


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 512 YTNANFRPRGEIKKLSPETAATRLVRVQSNLSKFAADGW 396
           YT+++  PRGE+    P      L R + N + F  DGW
Sbjct: 483 YTDSS-PPRGEVWIRGPAVCNGYLNRPEDNKAAFTEDGW 520


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 157  PFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYNPIGAVAT 315
            P V   +  +S   ++  SN  +++ ++   +D  R    YG TY+    V+T
Sbjct: 868  PLVYPNNATFSPSLLYKASNGDLYVNHTGAGADKYRFSLNYGGTYSKWKTVST 920


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 550 SSNFVLPVAASVSIPMPTLDPGGRSRS 470
           SS+F+ PV+   S P P L P  RS S
Sbjct: 36  SSSFMDPVSLFCSSPYPNLPPHSRSSS 62


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 379 WDLDEFHPSAANFDKFDW 432
           W L  +HP   NFD+ +W
Sbjct: 113 WPLFHYHPGEINFDEENW 130


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 635 ILFLKRINNGTEFYSD 588
           ILF+K  NNGT F+S+
Sbjct: 219 ILFIKHPNNGTSFFSN 234


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 223 MFICYSEHRSDTLRDVFGYGSTYNPIGAVATETYRQVVAVTPYNET-LVDPDYWD 384
           +F+CY  H +D L   +G+  + NP  ++  + +   +    + ++ L D  YW+
Sbjct: 219 IFLCYGPHGNDKLFTEYGFCLSNNPNISIQLDRF---IEFDKWQQSFLQDHGYWN 270


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 289 YNPIGAVATETYRQVVAVTPYNETLVDPDYWDLDEF 396
           YN          R V A+ P     + P+Y+DLD+F
Sbjct: 674 YNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 256 TLRDVFGYGSTYNPIG-AVATETYRQVVAVTPYNETLVDPDYWDLD 390
           T  ++  +G  ++P G A A  T   ++  + YN+ L DP   D+D
Sbjct: 668 TRPEIICHGVQFSPSGGAFAAATTEGLMIYSLYNDFLFDPINLDMD 713


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 516  TEAATGNTKLELSSVLGFALDRREVRIKFSTIIDSLKKQNPE 641
            TE    N KL+ ++  G  LD +++  KFS +I SL K+N E
Sbjct: 1457 TEFEKINLKLKEATKSGI-LDNKDLS-KFSELIQSLLKENEE 1496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,895
Number of Sequences: 5004
Number of extensions: 57364
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)