Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0831
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993...    32   0.49 
12_02_0326 + 17555731-17556387                                         28   6.0  
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187...    28   7.9  

>12_02_0554 +
           20351660-20352299,20398588-20398907,20399120-20399344,
           20399375-20399818
          Length = 542

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -3

Query: 532 PVAASVSIPMPTLDPGGRSRSYHPRLQLHA*SGSNRIYQNSQQMDGIHLNPSNQDPQEFH 353
           PV  + S+  P   PGG+S    P   L   +G N+   +    D   ++     PQE++
Sbjct: 201 PVQPTTSVSAPA--PGGKSTRNPPYPNLVGTNGINKEAPSGNSADK-EVHQEKAVPQEYY 257

Query: 352 CTELLLLP 329
            T+LLL P
Sbjct: 258 DTQLLLFP 265


>12_02_0326 + 17555731-17556387
          Length = 218

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 535 LPVAASVSIPMPTLDPGGRSRSYHPRLQLHA*SGSNRIYQNSQQMDGIHLNPSNQDPQEF 356
           LP ++S S P P  DPGG+ R   P ++L   SGS  +  +      I + P+++  +  
Sbjct: 17  LPSSSSASPPPPQPDPGGK-RQRRPSVRL---SGSIPLPSHLPHPRRIPITPASRSRKPL 72

Query: 355 H 353
           H
Sbjct: 73  H 73


>10_08_0928 +
           21617977-21618157,21618260-21618378,21618653-21618774,
           21618853-21619049,21619350-21619603,21619779-21619880,
           21619976-21620404,21620611-21621369,21621586-21621771
          Length = 782

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 632 LFLKRINNGTEFYSDFSSVQSKAEHRRQFQFRITCGRLCEYTNANF-RPRGEIKKLSPET 456
           LFL   ++ TE +SD     S A   R F+  +T   L   ++A+  RPR   + L+  T
Sbjct: 186 LFLSSDSSKTEIHSDDKPSLSDATPSRSFRSNLTWENLESLSSADHDRPRSLHEYLTEST 245

Query: 455 AAT 447
           +A+
Sbjct: 246 SAS 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,598,003
Number of Sequences: 37544
Number of extensions: 359892
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)