Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0831
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28729-7|AAO38609.1| 158|Caenorhabditis elegans Phosphodiestera... 35 0.047
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 35 0.047
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 29 3.1
Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical pr... 28 7.1
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z78062-8|CAD56570.2| 299|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z78062-7|CAD56571.2| 270|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z78062-6|CAN99661.1| 274|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL021571-10|CAD56601.2| 299|Caenorhabditis elegans Hypothetical... 27 9.4
AL021571-9|CAA16511.3| 270|Caenorhabditis elegans Hypothetical ... 27 9.4
AL021571-8|CAN99720.1| 274|Caenorhabditis elegans Hypothetical ... 27 9.4
>U28729-7|AAO38609.1| 158|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformf protein.
Length = 158
Score = 35.1 bits (77), Expect = 0.047
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -3
Query: 637 GFCFLRESIMVLNFIRTSLLSRAKPSTDDSSNFVLPVAAS-VSIPMPTLDPGGRSRSYHP 461
GF LR + + NF RTS S + ST + LP S V+IP + SYHP
Sbjct: 24 GFSSLRRELHLHNFFRTS--SPSASSTSRTPPAALPPRTSAVTIPGSNHKLTSSASSYHP 81
Query: 460 RLQLHA*SGSNRIYQNSQQMDGIHLNPS 377
+L + S + + G HL PS
Sbjct: 82 PRELTVSTFSAGSATAADGLGGAHLTPS 109
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 35.1 bits (77), Expect = 0.047
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -3
Query: 637 GFCFLRESIMVLNFIRTSLLSRAKPSTDDSSNFVLPVAAS-VSIPMPTLDPGGRSRSYHP 461
GF LR + + NF RTS S + ST + LP S V+IP + SYHP
Sbjct: 24 GFSSLRRELHLHNFFRTS--SPSASSTSRTPPAALPPRTSAVTIPGSNHKLTSSASSYHP 81
Query: 460 RLQLHA*SGSNRIYQNSQQMDGIHLNPS 377
+L + S + + G HL PS
Sbjct: 82 PRELTVSTFSAGSATAADGLGGAHLTPS 109
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 457 VSGDNFLISPLGLKLALVYSQRRPQVIRNWNCRRCSALL 573
++G NF +S +GL++ + P V+ ++ RCS L+
Sbjct: 54 LTGSNFKVSTIGLEILDAALRTSPDVLASYYFDRCSVLI 92
>Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical
protein R05H5.2 protein.
Length = 372
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 223 MFICYSEHRSDTLRDVFGYGSTYNPIGAVATETYRQVVAVTPYNETLVDPDYWDLD 390
M I SEH D + + P GA T T RQ A TP L +P + ++D
Sbjct: 317 MRIFSSEHLLDEPKMIDVPSGYERPTGAEETSTPRQPRARTPRARLLFEPCFTEID 372
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = -3
Query: 595 IRTSLLSRAKPSTDDSSNFVLPVAASVSIPMPTLDPGGRSRSYHP 461
IRT LL+ P + +SS LP+A SIP+P L RS+ P
Sbjct: 162 IRTPLLNLPTPQSLESSVPSLPIA---SIPIPALQSPIRSQPQTP 203
>Z78062-8|CAD56570.2| 299|Caenorhabditis elegans Hypothetical
protein T19A6.1b protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 130 FFLLSGFSWPFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYN 294
FF++ G S P+V + +H+ S ++F+C + ++ LR +F +G ++
Sbjct: 35 FFIIVGGSIPYVFQ---YVEIHHRRNASGFSLFVCLALCVANILRILFWFGKWFD 86
>Z78062-7|CAD56571.2| 270|Caenorhabditis elegans Hypothetical
protein T19A6.1a protein.
Length = 270
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 130 FFLLSGFSWPFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYN 294
FF++ G S P+V + +H+ S ++F+C + ++ LR +F +G ++
Sbjct: 31 FFIIVGGSIPYVFQ---YVEIHHRRNASGFSLFVCLALCVANILRILFWFGKWFD 82
>Z78062-6|CAN99661.1| 274|Caenorhabditis elegans Hypothetical
protein T19A6.1c protein.
Length = 274
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 130 FFLLSGFSWPFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYN 294
FF++ G S P+V + +H+ S ++F+C + ++ LR +F +G ++
Sbjct: 35 FFIIVGGSIPYVFQ---YVEIHHRRNASGFSLFVCLALCVANILRILFWFGKWFD 86
>AL021571-10|CAD56601.2| 299|Caenorhabditis elegans Hypothetical
protein T19A6.1b protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 130 FFLLSGFSWPFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYN 294
FF++ G S P+V + +H+ S ++F+C + ++ LR +F +G ++
Sbjct: 35 FFIIVGGSIPYVFQ---YVEIHHRRNASGFSLFVCLALCVANILRILFWFGKWFD 86
>AL021571-9|CAA16511.3| 270|Caenorhabditis elegans Hypothetical
protein T19A6.1a protein.
Length = 270
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 130 FFLLSGFSWPFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYN 294
FF++ G S P+V + +H+ S ++F+C + ++ LR +F +G ++
Sbjct: 31 FFIIVGGSIPYVFQ---YVEIHHRRNASGFSLFVCLALCVANILRILFWFGKWFD 82
>AL021571-8|CAN99720.1| 274|Caenorhabditis elegans Hypothetical
protein T19A6.1c protein.
Length = 274
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 130 FFLLSGFSWPFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSDTLRDVFGYGSTYN 294
FF++ G S P+V + +H+ S ++F+C + ++ LR +F +G ++
Sbjct: 35 FFIIVGGSIPYVFQ---YVEIHHRRNASGFSLFVCLALCVANILRILFWFGKWFD 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,674
Number of Sequences: 27780
Number of extensions: 323992
Number of successful extensions: 1088
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -