Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0829
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   3.0  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   3.0  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   5.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.0  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 77  SKMQKQVPAKGKKRKANTNLVTSEPKNVKQNSLVNSDNKNSI 202
           SK+QK  P  G        +V   P+N K+  ++ SD    I
Sbjct: 166 SKLQKLEPIMGHVSILTQLIVAQNPQNSKEEIIITSDKDEHI 207


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 522 AQETLLNENGMNDSSDDEDVPGK 590
           A + L N+  +ND SDDED  GK
Sbjct: 99  AHKGLRNKEVLNDDSDDEDDNGK 121


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 32  ANFFGTVNYHYY*FISKMQKQV--PAKGKKRKANTNLVTSEPKNVKQNSLVNSD 187
           A    TV   YY  +S  +K    P K K  K        + KN K+++LVN +
Sbjct: 11  AFLIATVYVAYYFLVSSDKKLATKPQKSKLTKLGKQKQRQKQKNTKKDTLVNRE 64


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 50  VNYHYY*FISKMQKQVPAKGKKRKANTNLVTSEPKNVKQNSL 175
           V Y Y    +++  + P K  K   +TN+  SEP+   QN L
Sbjct: 82  VRYRYLNKYARLPHEAPIKEAKLGPDTNIRPSEPRIGFQNYL 123


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 9   NPKLFDSKRTFSAQ*IIIIINLYPKCRNKCLLKVKNVK 122
           N KL+ ++  F    +++I+ L P+  + CLL +++ K
Sbjct: 6   NIKLYWNENDFLIADMLLILKLSPRSSSDCLLDLRDRK 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,180
Number of Sequences: 5004
Number of extensions: 27444
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)