Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0829
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0377 + 2930913-2931530,2931646-2931753                           28   7.0  
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47...    27   9.3  
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    27   9.3  

>01_01_0377 + 2930913-2931530,2931646-2931753
          Length = 241

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 201 MLFLLSELTKEFCFTFLGSDVTKFVFALRFLPLA 100
           M  L+    ++ CF   GSDV +F+  L  LP++
Sbjct: 8   MKLLIDTKAQKVCFAEAGSDVIEFISCLLCLPMS 41


>08_01_0068 +
           471729-472460,472578-472655,473270-473507,474130-474205,
           474820-474961,475326-475619,476037-476249
          Length = 590

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 ENGMNDSSDDEDVPGKSIPQKQ 608
           ENG ND++ DEDV G     KQ
Sbjct: 348 ENGGNDNTGDEDVKGSKGKSKQ 369


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 549 GMNDSSDDEDVPGKSIPQKQTQTPE 623
           G  DSSDD D  GKS  +++T   E
Sbjct: 228 GNEDSSDDADYEGKSSDEEETTAKE 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,219
Number of Sequences: 37544
Number of extensions: 150690
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)