Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0829
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 98   PAKGKKRK-ANTNLVTSEPKNVKQNSLVNSDNKNSILD 208
            P + KK+K    N + + P N  Q  +V SDNK+S+ D
Sbjct: 1535 PRQSKKQKDVMINKIIAMPSNSNQIIVVESDNKSSVWD 1572


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDEDVPGKSIPQKQTQTPEPK 629
           KK   +A   PA +        +DSSDDE    KS P K T  P  K
Sbjct: 294 KKTPAKAAPKPASK---KAESSSDSSDDEKPAAKSTPAKTTPKPTAK 337


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDEDVPGKSIPQKQTQTPEPK 629
           KK   +A   PA +        +DSSDDE    KS P K T  P  K
Sbjct: 569 KKTPAKAAPKPASK---KAESSSDSSDDEKPAAKSTPAKTTPKPTAK 612



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 489 KKKEEQAQKIPAQETLLNENGMNDSSDDEDVPGKSIPQKQTQTPEPK 629
           KK   +A   PA +        +DSSDDE    KS P K T  P  K
Sbjct: 447 KKTPAKAAPKPASK---KAESSSDSSDDEKPAAKSTPAKITPKPTAK 490


>Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical
           protein ZK938.7 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 142 CY*VCICFTFFTFSRHLF 89
           C+ VC C   FTF RH F
Sbjct: 189 CFLVCYCVVVFTFMRHEF 206


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 528  ETLLNENGMNDSSDDEDVPGKS 593
            ET+++  G ND+S+ ED P KS
Sbjct: 1099 ETVVDHAGQNDTSEVEDAPEKS 1120


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 528  ETLLNENGMNDSSDDEDVPGKS 593
            ET+++  G ND+S+ ED P KS
Sbjct: 1099 ETVVDHAGQNDTSEVEDAPEKS 1120


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 528  ETLLNENGMNDSSDDEDVPGKS 593
            ET+++  G ND+S+ ED P KS
Sbjct: 1099 ETVVDHAGQNDTSEVEDAPEKS 1120


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 375 VLPRIVKFFYVCVIFSVIFVCGSCQIRL 292
           VLP+   +  +CVIF++I V  +C+I L
Sbjct: 120 VLPKKNIWIVICVIFAIISVSVACEIYL 147


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/83 (27%), Positives = 40/83 (48%)
 Frame = +3

Query: 372 EQTTTEIKTNSASRKKRY*CRWN*N*KRH*KRD*FECG*KKKEEQAQKIPAQETLLNENG 551
           E+   E+K NS S KK          K   K +  E    ++EE  +K   + + +N+  
Sbjct: 340 EEEVVEVKKNSKSPKKT-------PKKTAVKEESEESSGDEEEEVVKK--KKSSKINKRK 390

Query: 552 MNDSSDDEDVPGKSIPQKQTQTP 620
             +SS DE+   +  P+K+T++P
Sbjct: 391 AKESSSDEEEEVEESPKKKTKSP 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,359,172
Number of Sequences: 27780
Number of extensions: 159238
Number of successful extensions: 592
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)