Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0829
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   7.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 474 FECG*KKKEEQAQKIPAQETLLNENG 551
           ++C  K+KEE+AQK   +      NG
Sbjct: 261 YQCAVKRKEEKAQKEKDKPNSTTMNG 286


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 564 SDDEDVPGKSIPQKQTQTPEPK 629
           S + +  G S P+K+ + P+PK
Sbjct: 14  SAESEFEGASSPKKRNKNPQPK 35


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 474 FECG*KKKEEQAQK 515
           ++C  K+KE++AQK
Sbjct: 58  YQCAVKRKEKKAQK 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,551
Number of Sequences: 438
Number of extensions: 2077
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)