Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0828
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 98 8e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 66 3e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 59 5e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 3e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 43 3e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 43 4e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 4e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 43 4e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 6e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 2e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 2e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 39 5e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.002
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 37 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.009
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 34 0.015
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 34 0.015
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 34 0.015
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.027
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.062
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 31 0.14
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.77
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 27 1.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.1
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 4.1
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 5.4
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 25 7.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.2
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 7.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 9.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.3 bits (234), Expect = 8e-22
Identities = 44/83 (53%), Positives = 55/83 (66%)
Frame = +2
Query: 263 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 442
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 443 KTMGYKEPTPIQAQGWPIAMSGR 511
K +G++ PTPIQ Q WP+AMSGR
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGR 160
Score = 74.1 bits (174), Expect = 2e-14
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRE
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRE 206
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.5 bits (155), Expect = 3e-12
Identities = 25/47 (53%), Positives = 40/47 (85%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRE
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRE 502
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 436
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 437 GVKTMGYKEPTPIQAQGWPIAMSGR 511
+ ++GY++PT IQAQ P SGR
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.3 bits (137), Expect = 5e-10
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRE 648
K+L+G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRE
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRE 336
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 344 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 502
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRE 648
++++G+AQTGSGKT A+ LP I + NN P A+VLAPTRE
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRE 125
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
F+E D + + + +G+K PTPIQ + P+ ++ R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
K+LV A TGSGKTLAY+LP + + G G AL++APTRE
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRE 83
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRE 648
K+LV A+TGSGKT AY++P + + Q I G AL+L PTRE
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRE 99
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 371 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
G+ + + F + N +Q+ + +++PT +Q++ P+A+ G+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRE
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRE 122
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRE
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRE 247
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 389 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
PI F+E + +++G+K YKEPTPIQA WP ++GR
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 526 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRE 648
AQTGSGKTLAY+LP + + P R G A+++APTRE
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRE 227
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+N +G A+TGSGKT A+ LP I + P G AL+L PTRE
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRE 86
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++VG+A+TGSGKT A+++P I H+ + AL+L+P RE
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRE 150
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
F+ + + + G+K PTPIQ + P+ + GR
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 359 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SGR
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 30.7 bits (66), Expect = 0.19
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 648
++L+ AQTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
K++VG A TGSGKT A+I+P + + +P ++ L+L PTRE
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRE 341
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRE 648
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRE
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRE 172
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 509 R 511
R
Sbjct: 127 R 127
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++L+ A TGSGKT+AY+ P + + P G A+++APTRE
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRE 126
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 511 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRE 648
+++G A TGSGKTLA+ +P + H +R D ALV+APTRE
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRE 203
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+N V A+TG+GKTLA++L A + P +++L+PTRE
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRE 123
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 34.3 bits (75), Expect = 0.015
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+N++G +Q+G+GKT A+ L + ++ P P A+ LAP+RE
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRE 195
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 511 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAP 639
NL+ V TG GK+L++++PA++ Q P + + LVL P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVP 1249
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 511 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAP 639
NL+ V TG GK+L++++PA++ Q P + + LVL P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVP 1249
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.5 bits (73), Expect = 0.027
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
FE+ + G+ G++ P+PIQ + PIA+SGR LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +1
Query: 451 GLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 630
G +R + + ++++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 631 LAPTRE 648
L PTRE
Sbjct: 118 LVPTRE 123
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.062
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 335 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 484
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 451 GLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 630
G + A S + ++++ AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 631 LAPTRE 648
L+PTRE
Sbjct: 95 LSPTRE 100
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 526 AQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRE 648
A TGSGKTL+Y++P + ++++ P +R +V+ PTRE
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRE 216
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 0.77
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +1
Query: 160 DLATVAIDLEDLEDLVGKKNSLEVRTCVAQIGFCF 264
D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 276 DISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +1
Query: 451 GLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 630
G +R A + ++++ AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 631 LAPTRE 648
LAPTRE
Sbjct: 93 LAPTRE 98
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -1
Query: 242 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 96
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 95 IPVT 84
PV+
Sbjct: 198 APVS 201
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LDSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 397
+D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 111 IDVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -3
Query: 189 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 31
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 445 DNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 624
D+G + + S + +++ A++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 625 -LVLAPTRE 648
LVL TRE
Sbjct: 122 VLVLCHTRE 130
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 98 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 18
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -1
Query: 257 NPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPV--T 84
+P + V S F ++ S +S AT+AK + +S KF + V T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200
Query: 83 RHDYFSDLVEDVYLNYGFFLTQG 15
H+Y+++LV+ ++ F +QG
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQG 223
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIV 576
K++ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 452 PLSLHLVAHNQENL--LLQSIE 393
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 648 LSGRRQDQSNRTITSPNRRL 589
LSG+R D S RT+ SP+ L
Sbjct: 350 LSGKRVDFSGRTVISPDPNL 369
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 245 ATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 114
+T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1113 STSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 273 LSTKTFMIHILQFSKDHHMKSKSTEIIT 356
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -2
Query: 535 PFALRQLNSSRH--SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYS 362
P + +L+++ H +Y L +G H L ++ + F K ++ + + S
Sbjct: 672 PDLVNRLSTTGHFLAYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCS 731
Query: 361 YLVIISVLFDFIW 323
Y++I+ + +W
Sbjct: 732 YVLILCPVHPIVW 744
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,679
Number of Sequences: 5004
Number of extensions: 54192
Number of successful extensions: 207
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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