Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0828
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 103 1e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 91 8e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 91 8e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 74 1e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 72 3e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 72 3e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 9e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 9e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 9e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 6e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 2e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 48 4e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 47 9e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 7e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 7e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 44 9e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 44 1e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 1e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 43 2e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 4e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 42 4e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 4e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 42 5e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 5e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 42 5e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 5e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 42 5e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 6e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 41 8e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 40 0.001
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.006
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 38 0.008
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.013
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.013
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 36 0.023
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 36 0.023
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 35 0.041
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 35 0.054
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 34 0.071
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 33 0.16
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 32 0.29
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 32 0.29
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.29
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.29
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 32 0.38
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 32 0.38
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 31 0.66
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 31 0.88
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 31 0.88
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 30 1.2
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 30 1.2
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 30 1.2
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)... 29 2.7
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.7
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 3.5
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 3.5
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 28 4.7
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 28 4.7
At2g25460.1 68415.m03049 expressed protein 28 4.7
At5g25520.2 68418.m03037 transcription elongation factor-related... 28 6.2
At2g17000.1 68415.m01960 mechanosensitive ion channel domain-con... 28 6.2
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 28 6.2
At4g33480.1 68417.m04755 expressed protein 27 8.2
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c... 27 8.2
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.2
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.2
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 103 bits (247), Expect = 1e-22
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +2
Query: 242 SPR-LDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 418
SPR LD L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 419 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
PDYV + VK G+ EPTPIQ+QGWP+AM GR
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/47 (70%), Positives = 42/47 (89%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRE
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRE 183
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 90.6 bits (215), Expect = 8e-19
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +2
Query: 245 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 425 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+ + + +G+ EPTPIQAQGWP+A+ GR
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 74.1 bits (174), Expect = 7e-14
Identities = 30/47 (63%), Positives = 42/47 (89%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRE
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRE 249
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 90.6 bits (215), Expect = 8e-19
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +2
Query: 245 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 425 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+ + + +G+ EPTPIQAQGWP+A+ GR
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 74.1 bits (174), Expect = 7e-14
Identities = 30/47 (63%), Positives = 42/47 (89%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRE
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRE 249
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 73.7 bits (173), Expect = 1e-13
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +2
Query: 257 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 436
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 437 GVKTMGYKEPTPIQAQGWPIAMSGR 511
+K Y++PT IQ Q PI +SGR
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/47 (55%), Positives = 40/47 (85%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++++G+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRE
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRE 312
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 72.1 bits (169), Expect = 3e-13
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTRE
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE 480
Score = 64.9 bits (151), Expect = 4e-11
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 260 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 439
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 440 VKTMGYKEPTPIQAQGWPIAMSGR 511
+K + Y++P PIQAQ PI MSGR
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 72.1 bits (169), Expect = 3e-13
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++ +GVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTRE
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE 613
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +2
Query: 260 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 439
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 440 VKTMGYKEPTPIQAQGWPIAMSGR 511
+K + Y++P PIQ Q PI MSGR
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.5 bits (165), Expect = 9e-13
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 296 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 475
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 476 QAQGWPIAMSGR 511
QAQ WPIAM GR
Sbjct: 185 QAQSWPIAMQGR 196
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRE
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRE 241
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.5 bits (165), Expect = 9e-13
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 296 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 475
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 476 QAQGWPIAMSGR 511
QAQ WPIAM GR
Sbjct: 185 QAQSWPIAMQGR 196
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRE
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRE 241
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.5 bits (165), Expect = 9e-13
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 296 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 475
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 476 QAQGWPIAMSGR 511
QAQ WPIAM GR
Sbjct: 185 QAQSWPIAMQGR 196
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRE
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRE 241
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 278 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 445
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 446 TMGYKEPTPIQAQGWPIAMSGR 511
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++V +A+TGSGKTL Y++PA + + + R +GP L+LAPTRE
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRE 518
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/50 (46%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRE 648
++++G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRE
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRE 400
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +2
Query: 341 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + R
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 287 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 467 TPIQAQGWPIAMSGR 511
TPIQ QG P+ +SGR
Sbjct: 121 TPIQVQGLPVVLSGR 135
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 612
KD G+ L ++++G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 613 GPIALVLAPTRE 648
GPIALV+ P+RE
Sbjct: 173 GPIALVICPSRE 184
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 469
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 470 PIQAQGWPIAMSGR 511
PIQ QG P+ ++GR
Sbjct: 171 PIQVQGLPVILAGR 184
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRE 648
++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RE
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRE 233
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRE 648
++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRE
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRE 202
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 502
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 503 SGR 511
GR
Sbjct: 150 DGR 152
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRE
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRE 312
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 440 VKTMGYKEPTPIQAQGWPIAMSGR 511
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 335 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 526 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRE 648
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTRE
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRE 115
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 449 MGYKEPTPIQAQGWPIAMSGR 511
MG++ PT +QAQ P+ +SGR
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 618
KD G + + L K+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 619 --IALVLAPTRE 648
I LV+ PTRE
Sbjct: 458 PIIVLVVCPTRE 469
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 344 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SGR
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 526 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
A TGSGKT A+I P ++ + DG A++L+P RE
Sbjct: 185 APTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARE 221
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 439 CKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 618
CK+ G+++ + + ++++G+AQTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 619 IALVLAPTRE 648
ALV+ PTRE
Sbjct: 128 FALVVTPTRE 137
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE ++ + K +G ++PTP+Q P ++GR
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGR 96
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGPIALVLAPTRE 648
++++G A+TG+GKTLA+ +P I I RG P+ LVLAPTRE
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRE 189
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 436 RCKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR--- 606
+ K NG++ +S +LVG A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 607 --GDGPIALVLAPTRE 648
G P LVL PTRE
Sbjct: 170 GYGRSPSVLVLLPTRE 185
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGP 618
K G+++ + L + ++++G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 619 IALVLAPTRE 648
LVLAPTRE
Sbjct: 192 QCLVLAPTRE 201
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 362 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
TV GV H F E N + + +T+GYK+PTPIQA P+A++GR
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 439 CKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 618
C+ G ++ ++ + + ++L A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 619 IALVLAPTRE 648
L+L PTRE
Sbjct: 240 RVLILTPTRE 249
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 621
K+ G R + + + ++++G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 622 ALVLAPTRE 648
LV+ PTRE
Sbjct: 229 VLVICPTRE 237
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +2
Query: 269 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 448
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 449 MGYKEPTPIQAQGWPIAMSG 508
MG+ T IQA+ P M G
Sbjct: 172 MGFARMTQIQAKAIPPLMMG 191
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD--G 615
KD G + + L K+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 616 PI-ALVLAPTRE 648
PI ALV+ PTRE
Sbjct: 130 PILALVICPTRE 141
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRE 648
K+++ A+TG+GKT+A++LP+I + PP R + I LV+ PTRE
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRE 167
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRE 648
++L+ AQTGSGKT A+ P I I I R G P+A++L+PTRE
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRE 235
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 272 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 448
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 449 MGYKEPTPIQAQGWPIAMSGR 511
Y +PTP+Q PI +GR
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 618
K+ G Q + + K+++G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 619 IALVLAPTRE 648
+V+ PTRE
Sbjct: 164 -VIVICPTRE 172
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRE 648
K+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTRE
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 197
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +2
Query: 248 RLDSVSLQPFNKN-FYDPHPTVLKRSPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANF 418
R+DS + P FY P S ++ + R ++ V G V P+ F
Sbjct: 61 RVDSARVFPATDECFYVRDPG---SSSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGL 117
Query: 419 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA 523
P + ++T GY PTPIQ Q P A++G+ LA
Sbjct: 118 PPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRE 648
K+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTRE
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRE 648
++L+ AQTGSGKT A+ P I I ++R G P+A++L+PTRE
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRE 248
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 266 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 442
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 443 KTMGYKEPTPIQAQGWPIAMSGR 511
+ Y +PTP+Q PI + GR
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +1
Query: 463 TDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 642
TD S++ + + ++++G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 643 RE 648
RE
Sbjct: 153 RE 154
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRE 648
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+RE
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRE 131
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 509 R 511
+
Sbjct: 84 K 84
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRE 648
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRE
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRE 240
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 359 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ R
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRE 648
++L+ AQTGSGKT A+ P I I + R G P A++L+PTRE
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRE 240
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 359 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ R
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +1
Query: 511 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
++V +A+TGSGKT A+++P + + P +G G AL+L+PTR+
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRD 109
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +1
Query: 439 CKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHI-----NNQPPIR 603
C+ G + + L + K+++G+AQTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 604 RGDGP--IALVLAPTRE 648
R P A VL+PTRE
Sbjct: 84 RRPDPAFFACVLSPTRE 100
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 377 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ G+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRE 648
K++V A TGSGKTLA++LP I I N+ PP + + ++++PTRE
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRE 101
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRE 648
K++V A TGSGKTLA++LP I I N+ PP + + ++++PTRE
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRE 102
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQ----PPIRR-GDGPIALVLAPTRE 648
++++ A+TG+GKTLA+ +P I + + RR G P LVLAPTRE
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRE 191
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +1
Query: 448 NGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 615
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 616 PIALVLAPTRE 648
AL+L PTRE
Sbjct: 406 IFALILCPTRE 416
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRE 648
K++V + TGSGKTLAY+LP IV + + G P +VL PTRE
Sbjct: 150 KSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRE 200
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 496 SYVWKNLVGVAQTGSGKTLAYILPAI 573
+Y K+++G A+TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 448 NGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 615
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 616 PIALVLAPTRE 648
L+L PTRE
Sbjct: 453 IFVLILCPTRE 463
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRE 648
K+ + Q+GSGKTLAY++P I + Q + G P +VL PT E
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAE 462
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
FE+ + G+ G++ P+PIQ + PIA++GR LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
FE+ + G+ G++ P+PIQ + PIA++GR LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 442 KDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAIVHINN 588
+D+G R + + K+++ A+TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 389 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
PI+ F++ D V +GV GYK+P+ IQ + + GR
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 505 WKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRE 648
+K++ A TGSGKTLA+++P + + PP + + ++++PTRE
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRE 101
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -1
Query: 260 QNPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVT 84
QN +W VL + F F K R ++S A +R ++ VA + T+ ++ +
Sbjct: 352 QNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASS 411
Query: 83 RH--DYFSDLVEDVYLNYGFFLTQGPP 9
H YF + E ++ Y GPP
Sbjct: 412 FHMSTYFDRIQESLFTQYVIETLSGPP 438
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 532 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
TGSGKTL+Y LP IV + P+R ALV+ PTR+
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRD 105
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +1
Query: 526 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRE 648
AQTGSGKTL Y+L IN Q A+++ PTRE
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRE 155
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -1
Query: 260 QNPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTR 81
+NP W V+ + + P KSS +K I V + + A FVAS + TR
Sbjct: 220 ENPTWEFIVVPTLPPY-PKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTR 271
Query: 80 HDYFSDLVEDVYLNYG 33
H +++E+ + YG
Sbjct: 272 HKKVKEVLEEWEIQYG 287
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA*RKRVPAK 547
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
similar to myb transcription factor GI:3941436 from
[Arabidopsis thaliana]
Length = 336
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Frame = -3
Query: 600 NRRLVVYVHN----GWQDVGQRFA------GTRLRYAN*ILPDIAIGQ 487
+++L+ Y+H GW+D+ Q+ RLR+AN + PDI G+
Sbjct: 22 DKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYLKPDIKRGE 69
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 532 TGSGKTLAYILPAIVHI 582
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 239 ASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 418
ASP L S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 419 PDYVQQGVKTM 451
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 239 ASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 418
ASP L S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 419 PDYVQQGVKTM 451
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 412 KFS*LCATRCKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILP 567
K S + K GL +H + ++ + KN+ T SGK+L Y +P
Sbjct: 377 KLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 184 LEDLEDLVGKKNSLEVRTCVAQIGFCFAPTF 276
+ D++ +GK V C A++G CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 159 EKNYRRICCLLQIWNHRFHGYY 94
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 439 CKDNGLQRTDAHSSSRLADSYVWKNLVGVAQTGSGKTLAYILPAI 573
CK NG+ ++ S +A SYV VG A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
>At2g17000.1 68415.m01960 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 849
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = -1
Query: 266 AKQNPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFG--TTVSTAII 93
A QN +W VL + F F K + ++S + S +I+ F+ S+ T+ ++
Sbjct: 314 AVQNCLWLGLVLLAWHFLFDKKVEKETQSDVLLLMS-KILVCFLLSTVLWLIKTLVVKVL 372
Query: 92 PVTRH--DYFSDLVEDVYLNYGFFLTQGPP 9
+ H YF + E ++ +Y GPP
Sbjct: 373 ASSFHVSTYFDRIQEALFHHYLIETLSGPP 402
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = -1
Query: 260 QNPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVT 84
QN +W VL + F F K R +S ++ +I VA + T+ ++ +
Sbjct: 342 QNCLWLGLVLIAWHFLFDKKVEREMRSTVLKYVTKVLICLLVAVIIWLIKTLLVKVLASS 401
Query: 83 RH--DYFSDLVEDVYLNYGFFLTQGPP 9
H YF + E ++ Y GPP
Sbjct: 402 FHMSTYFDRIQESLFTQYVIETLSGPP 428
>At4g33480.1 68417.m04755 expressed protein
Length = 336
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 377 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPT--PIQAQGWPIAMSGRI*LA*RKRVPAKR 550
E+ + FEE + DY + P P G+ I +GR+ +A +KR+
Sbjct: 92 ELRDSEDAFEEDDDADYSSSSSSLATFNSPPTIPKPPAGFVINETGRVLMASKKRITTVI 151
Query: 551 WPTSCQPL 574
PT+ PL
Sbjct: 152 DPTNNSPL 159
>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 255
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 202 LVGKKNSLEVRTCVAQIGFCFAP 270
L G+ +L + TC + +G+C P
Sbjct: 164 LAGRNGNLNLHTCTSLVGYCLLP 186
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 467 TPIQAQGWPIAMS 505
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 467 TPIQAQGWPIAMS 505
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 467 TPIQAQGWPIAMS 505
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,214
Number of Sequences: 28952
Number of extensions: 281723
Number of successful extensions: 1004
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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