Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0826
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    53   5e-08
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.52 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.5  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.5  

>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 26/75 (34%), Positives = 35/75 (46%)
 Frame = +1

Query: 259 LTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKF 438
           LT  R++Y +K      + F  P   L+D  + QP F AN   G V   PNG    E + 
Sbjct: 54  LTNQRLVYIAKDTDCDFKDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIPCEAEV 113

Query: 439 KLTFKSGGAIEYGQA 483
           KL F  GG   + +A
Sbjct: 114 KLQFNEGGIFNFVEA 128


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +3

Query: 624 PPYSAFPD--QPPP--NSVFVSNTPPPYPGVTGASYPTGP 731
           PP SA     QPPP  +S  VSN P P P + G S P  P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 122 LNTAHADHGVLIHAGECII--LFSDNVSVEFYGNDT 223
           LN A +D G  I A +  +  L S N  +EFYG+DT
Sbjct: 114 LNIAESDTGSSIEAQDSWVYQLNSFNKKIEFYGDDT 149


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
           P  +  P  PP   +     PPP PGV GA  P  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80   LNVIYNQHNNCIMSLNTAHADHGVLIHAGECI-ILFSDNVS 199
            L+ + NQ    + S+N   ADH  L+ A EC  IL +D+ S
Sbjct: 1396 LHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKS 1436


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -3

Query: 259 GTPSLLDPLKLWCIIPIEF--N*HIVRKQDD----AFPCVYQNSVI 140
           G P  LD   +WCI+P  F  N    +K       ++PCV  N ++
Sbjct: 854 GRPLELDTDGIWCILPESFPENFEFKKKSGGKVFISYPCVMLNHLV 899


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 624 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASY 719
           PPY + P +P P +V  S++  P       +Y
Sbjct: 356 PPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAY 387


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 624  PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGPG 734
            PP  A P   PP++   S  PP  P     +    PG
Sbjct: 1885 PPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPG 1921


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 624  PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGPGF 737
            P YSA      P S   S T P Y   + +  PT P +
Sbjct: 1604 PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,408
Number of Sequences: 5004
Number of extensions: 62729
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)