Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0826
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.56 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 621 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPTGP 731
           +PP +  P  P PN   +S   PP P + G S PT P
Sbjct: 409 LPPSAGAPMPPIPNMSNMSGM-PPLPNMPG-SMPTMP 443


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +3

Query: 141  ITEF*YTQGNASSCFLTMCQLNSMGMIHQSLRGSRRDGVPHYS*NDLQFKEEYR 302
            +TE    Q  ASS       + S  +I Q  R SRR  VP  +  D    E YR
Sbjct: 1303 MTEARNQQQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLA-QDSSEDESYR 1355


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 408 RLGTNFTFYTVGREHRLFHSYILQCNKRKTE*SHGICI 295
           R  T++T Y      + FH       +R+ E +H +C+
Sbjct: 10  RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,303
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)