Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0824
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 128 6e-31
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 124 7e-30
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 2.0
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 2.6
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 3.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.5
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 26 3.5
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 4.6
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 6.1
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 6.1
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 25 6.1
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 6.1
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 6.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.1
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 8.1
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 128 bits (309), Expect = 6e-31
Identities = 59/88 (67%), Positives = 73/88 (82%), Gaps = 2/88 (2%)
Frame = +2
Query: 254 LSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLL 427
LSVAYKN++GARR+SWR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L
Sbjct: 46 LSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVL 105
Query: 428 DKHLIPKASNPESRVFYLKMKGDYYRYL 511
+KHLIP A+ ES+VFY KMKGDYYRYL
Sbjct: 106 EKHLIPAATTGESKVFYYKMKGDYYRYL 133
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 120 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLFQL 263
MS +E V AKLAEQAERY++M MK+V + +LS EERNL +
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSV 48
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 124 bits (300), Expect = 7e-30
Identities = 57/88 (64%), Positives = 73/88 (82%), Gaps = 2/88 (2%)
Frame = +2
Query: 254 LSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLL 427
LSVAYKNV+GARR+SWR++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L
Sbjct: 47 LSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVL 106
Query: 428 DKHLIPKASNPESRVFYLKMKGDYYRYL 511
+KHLIP A++ ES+VFY KMKGDYYRYL
Sbjct: 107 EKHLIPNAASAESKVFYYKMKGDYYRYL 134
Score = 48.4 bits (110), Expect = 8e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +3
Query: 123 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLFQL 263
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNL +
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSV 49
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = -1
Query: 538 VWF--LLWPLVQ-VPVVISFHFEVKHSTFWIT 452
+W+ +LW LV V V++S +F++ ST+W+T
Sbjct: 460 IWYAQILWYLVFIVSVILSIYFQLG-STYWVT 490
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 269 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 385
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 2.6
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Frame = +2
Query: 209 SDGNRRRT*QRGEEPLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEK 388
SD + R G + ++ + + R+ V+SS + E S + + R E
Sbjct: 236 SDSDTERQSDSGSKNVARQFSRIKRKRK----VLSSSSEDDESSSPEDLLKPIIRSTEEM 291
Query: 389 E-LREICYDVLGL--LDKHL---IPKASNPESRVFYLK---MKGDYYRYLHKWPQEKPDI 541
E L E+ +V L +D+ +P+ NP + FY K ++ Y L EK D
Sbjct: 292 ENLNELEQEVQDLDPIDEGFEEKVPRFRNPSKKAFYEKLHSLRNRSYSKLESLTSEKSDT 351
Query: 542 LL 547
L+
Sbjct: 352 LI 353
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 323 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 448
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 152 TLHQFFLVDGHRGRWKRTNSLMPDLLKPAVLE 57
TL FL DG RWK + P V+E
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVME 83
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -3
Query: 122 HRGRWKRTNSLMPDLLKPAVLE----CKHFFYFISNHLPQSR 9
HR R + + ++ D+L+ A+ E CK F++NH P+S+
Sbjct: 31 HRQRLRAVDEVV-DVLRTALQEKNQSCKRIESFVANHQPESQ 71
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 257 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 391
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 4.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 413 VLGLLDKHLIPKASN-PESRVFYLKMKGD--YYRYLHKWPQEKPDIL 544
VL L+ L+ A+ PE ++FY K GD Y +YL P + +IL
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYLLLDPSKHVEIL 555
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 257 SVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 397
SV+ + +R S+ S E + E SE R+Q++ +E R + EK+LR
Sbjct: 358 SVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 535 WFLLWPLVQVPVVISFHFEVKHSTFWITSFRN*VFV 428
WFLL +V+V + +SF V H IT + VF+
Sbjct: 23 WFLLIIIVEVTITLSFEGYVFHHFRLITVEKIDVFI 58
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 320 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESRVFYLKM-KGD 496
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 497 YYR 505
+R
Sbjct: 100 SFR 102
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/85 (21%), Positives = 36/85 (42%)
Frame = -3
Query: 305 HAMMTVGHLRHSYKQLKEVPLLVAKFDAGFRHFLHRGRHVVISLSLFGQFGTLHQFFLVD 126
H + V +L + QLKEVP +A R L + + + +H+ +LV
Sbjct: 864 HMFLGVRYLELANVQLKEVPKYIATSMPNLR-VLDLSHNYISDIESLKPLQMIHRLYLVG 922
Query: 125 GHRGRWKRTNSLMPDLLKPAVLECK 51
+ + ++ +L + VL+ +
Sbjct: 923 NRIKKMRNLCDILANLKQLNVLDLR 947
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 341 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 463
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 470 VFYLKMKGDYYRYLHKW 520
VF+ K DYYRY+ W
Sbjct: 2160 VFFQNCKLDYYRYVGDW 2176
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 465 VECFTSK*KEITTGTCTSGHRRNQTFCC 548
++ TS +I G CTS N+ FCC
Sbjct: 115 LDIVTSWLSDIRRGYCTSHWYYNEKFCC 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,092
Number of Sequences: 5004
Number of extensions: 46620
Number of successful extensions: 167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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