Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0822
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   107   1e-24
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   104   1e-23
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   1.9  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   3.4  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   4.5  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   4.5  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   4.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.8  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  107 bits (256), Expect = 1e-24
 Identities = 48/79 (60%), Positives = 62/79 (78%)
 Frame = +1

Query: 274 EQKEETKXSEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKG 453
           EQKEE++ +  +  +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESKVFYYKMKG
Sbjct: 68  EQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKG 127

Query: 454 DYHRYLAEFATGNDRKEAA 510
           DY+RYLAEF  G   KEAA
Sbjct: 128 DYYRYLAEFTVGEVCKEAA 146



 Score = 85.0 bits (201), Expect = 7e-18
 Identities = 44/61 (72%), Positives = 52/61 (85%)
 Frame = +2

Query: 71  SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 250
           + RE++VY AKLAEQAERY+EMVE MK VA  N   ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59

Query: 251 S 253
           S
Sbjct: 60  S 60



 Score = 31.9 bits (69), Expect = 0.068
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +3

Query: 510 ENSLVAYKAASDIDMTELPP 569
           ++SL AYKAASDI + ELPP
Sbjct: 147 DSSLEAYKAASDIAVAELPP 166


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  104 bits (249), Expect = 1e-23
 Identities = 46/79 (58%), Positives = 63/79 (79%)
 Frame = +1

Query: 274 EQKEETKXSEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESKVFYYKMKG 453
           EQKEE+K +  ++ +I+ YR ++E+EL  IC DIL VL+K+LIP++ + ESKVFYYKMKG
Sbjct: 69  EQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKG 128

Query: 454 DYHRYLAEFATGNDRKEAA 510
           DY+RYLAEFA G  R+ +A
Sbjct: 129 DYYRYLAEFAVGEKRQHSA 147



 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 48/61 (78%), Positives = 52/61 (85%)
 Frame = +2

Query: 71  SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 250
           + RED VY AKLAEQAERY+ MVE MK+VAS   +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4   TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60

Query: 251 S 253
           S
Sbjct: 61  S 61


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 59  SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 238
           SST S    N    ++  Q+E Y ++ +   + +  ++SD E  +E R    V  +N + 
Sbjct: 45  SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSVS 104

Query: 239 A 241
           +
Sbjct: 105 S 105


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 425 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 336
           DSP   +G R +S+  R  +   RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 313 NMIRAYRSQVEKELRDICSDILGVLDK 393
           N +RA + +++K+L+D+  +   +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 561 VRSCRCRRLPCTRPASSRSLLAVVTGRELG-QVPVVVALHFVIKNF 427
           + S RC     TR  S RS++  + GR+ G       ++H   KNF
Sbjct: 132 ITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNF 177


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 188 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 66
           S+H   + +  H    P F  S    QLTLL +   YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 343 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 441
           E+ELRD+     G+   YL    +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 89  VYKAKLAEQAE----RYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 247
           +YK KL    E    R DE+V  MKN+  +N + +EL     +     ++N + + R
Sbjct: 202 IYKEKLRFSLESRKSRVDEIVNEMKNMCGKNPT-SELPTNYSDKTLTLWENELSSMR 257


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 92  THYLPFPTLWMTNDFTLTKS 33
           T+YL FP  +  ND+TL+ +
Sbjct: 455 TYYLEFPGRFSVNDYTLSSN 474


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 80  EDNVYKAKLAEQAERYDEMVEAMKNVASRNV 172
           ED++++  + +Q   Y E +E  K   ++NV
Sbjct: 713 EDSMHEIAIKKQHSTYSEALEVAKKAGTKNV 743


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,784
Number of Sequences: 5004
Number of extensions: 36482
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)