Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0821
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)                   31   1.3  
SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_4309| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-33)                  29   3.9  
SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 500 YLIVFLRCFVVFNCCLVSTNYYFEYIKPYVCCIIVQFNNVQLVSVILI 643
           +LI  L    +   C++S N Y + +KP V C +  FN+ + +SVI++
Sbjct: 166 FLITELLLASMLTICVISVNRYLKIVKPRVYCSV--FNS-KTISVIIL 210


>SB_15814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 8/36 (22%), Positives = 23/36 (63%)
 Frame = +2

Query: 467 KMHDMYLICIMYLIVFLRCFVVFNCCLVSTNYYFEY 574
           K H ++ + +  +++F  C+  +NC +++ N+Y+ +
Sbjct: 243 KKHRVFYMSLTIVVIFGLCYGPYNCFMLALNFYWRW 278


>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1319

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 147 NHYDSS--PQESTFVIRSWPDVIGPSLFADALRL-VSNRKPCSRHLCC 13
           +H+ SS  PQE +++  SW   +  +    AL L  +NRK  +  +CC
Sbjct: 451 HHFRSSSIPQEQSYLRESWQTCVNQNKKVPALLLRDNNRKLATSSMCC 498


>SB_4309| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-33)
          Length = 309

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 413 LVVFSALKFIKLLNSMINKMHDMYLICIMYLIVFLRCFVVFNC--CLVSTNYYFEYIKP 583
           L VFS  +  +  +  +N  +  Y+I    L++F+ C V+  C  C+V   Y+   + P
Sbjct: 145 LYVFSVFENGECSHKYVN--YKTYIIIAFSLVIFIPCLVMLFCYGCIVKELYFKNSVAP 201


>SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 530 VFNCCLVSTNYYFEYIKPYVCCIIVQFNNVQLVSVIL 640
           VFN C V+ N YF  +KP    +++ + + + V   L
Sbjct: 720 VFNLCAVAVNQYFVIVKPLHYPLLMTYTHARRVITAL 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,780,123
Number of Sequences: 59808
Number of extensions: 352233
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)