Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0821
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical pr... 30 1.5
AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein. 30 1.5
AL033510-1|CAA22064.2| 339|Caenorhabditis elegans Hypothetical ... 30 1.9
AL022288-5|CAA18366.1| 301|Caenorhabditis elegans Hypothetical ... 29 2.6
AL022288-1|CAA18362.1| 301|Caenorhabditis elegans Hypothetical ... 29 2.6
Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 29 4.5
Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical pr... 28 5.9
U80030-6|AAG24164.1| 367|Caenorhabditis elegans Serpentine rece... 28 7.9
>Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical
protein C18D4.9 protein.
Length = 361
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 398 INYYMLVVFSALKFIKLLNSMINKMHDMYLICIMYLIVFLRCFVVFNCCLVSTNYYFEYI 577
+NY ++++FS I+LL + LI ++ + FLR F C S N +Y+
Sbjct: 94 VNYRVILIFSIASIIQLLRFFVTLQVFHVLIFMLAIQNFLRFFFPLKCS-SSLNSIHKYV 152
Query: 578 KP-YVCCII 601
KP Y+C ++
Sbjct: 153 KPIYICFVL 161
>Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical
protein F09B12.6 protein.
Length = 570
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 407 YMLVVFSALKFIKLL---NSMINKMHDMYLICIMYLIVFLRCFVVFNCCLVSTNYY 565
++L+ + ++F++ L N + M YLI I +++ L ++F+CC+V+ Y
Sbjct: 442 FLLISYFVVRFVRYLIAINCNCDLMQPQYLI-ISGILIVLMFALLFSCCMVALGEY 496
>AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein.
Length = 570
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 407 YMLVVFSALKFIKLL---NSMINKMHDMYLICIMYLIVFLRCFVVFNCCLVSTNYY 565
++L+ + ++F++ L N + M YLI I +++ L ++F+CC+V+ Y
Sbjct: 442 FLLISYFVVRFVRYLIAINCNCDLMQPQYLI-ISGILIVLMFALLFSCCMVALGEY 496
>AL033510-1|CAA22064.2| 339|Caenorhabditis elegans Hypothetical
protein Y40H7A.1 protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +2
Query: 407 YMLVVFSALKFIKLLNSMINKMHDMYLICIMYLIVFLRCFVVFNCCLVSTNYYFEYIK 580
Y+L VF++ ++++ + + +Y +VF+ V+ C +S Y Y K
Sbjct: 79 YVLFVFTSTNYLEVPRIFMRGLLSIYGTSYSQALVFIAVQFVYRCFAISRRKYLHYFK 136
>AL022288-5|CAA18366.1| 301|Caenorhabditis elegans Hypothetical
protein ZK1025.8 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -3
Query: 234 CEIKKKRQ*IQVSSLKII*FNEKQLLNIKNHYDSSPQESTFVIRSWPDVIGPS----LFA 67
CEI+K + ++ + ++ +NE Q L KN++ ++ + ST S + + PS
Sbjct: 52 CEIRKSMSQLTLNMMCLL-YNETQYLQDKNNFTNTWETSTRKCTSETNFVTPSDSLKNDK 110
Query: 66 DALRLVSNRKPCSR 25
DA+R V R P R
Sbjct: 111 DAVRFVFVRDPFRR 124
>AL022288-1|CAA18362.1| 301|Caenorhabditis elegans Hypothetical
protein ZK1025.2 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -3
Query: 234 CEIKKKRQ*IQVSSLKII*FNEKQLLNIKNHYDSSPQESTFVIRSWPDVIGPS----LFA 67
CEI+K + ++ + ++ +NE Q L KN++ ++ + ST S + + PS
Sbjct: 52 CEIRKSMSQLTLNMMCLL-YNETQYLQDKNNFTNTWETSTRKCTSETNFVTPSDSLKNDK 110
Query: 66 DALRLVSNRKPCSR 25
DA+R V R P R
Sbjct: 111 DAVRFVFVRDPFRR 124
>Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical
protein C08B6.11 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 449 LNSMINKMHDMYLICIMYLIVFLRCFVVFNC-CLVSTNYYFEYIKPYV 589
+N + ++ + I + IVFL F+ F C+ T Y++ Y+ PY+
Sbjct: 322 MNFSLLRLLFYFAIKSRWSIVFLIFFIAFPLICIFITLYFYFYVMPYI 369
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 503 LIVFLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 604
++ FL+ FV+F C ++ + E++ P + V
Sbjct: 307 VMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 503 LIVFLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 604
++ FL+ FV+F C ++ + E++ P + V
Sbjct: 307 VMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 503 LIVFLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 604
++ FL+ FV+F C ++ + E++ P + V
Sbjct: 307 VMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 503 LIVFLRCFVVFNCCLVSTNYYFEYIKPYVCCIIV 604
++ FL+ FV+F C ++ + E++ P + V
Sbjct: 307 VMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTV 340
>Z81034-1|CAB02726.1| 194|Caenorhabditis elegans Hypothetical
protein C15C6.1 protein.
Length = 194
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Frame = +2
Query: 398 INYYMLVVFSALKFIK------LLNSMINKMHD----MYLICIMYLIVFLRCFVVFNCCL 547
++ Y LV+FS FIK + N M + MH + + + + FL CF++FN
Sbjct: 99 LSCYALVIFSFYFFIKPYYILMISNWMFDTMHGEKNAAFYLQSLAMYTFLTCFMLFNAWQ 158
Query: 548 VSTN-YYFEYI 577
+Y E+I
Sbjct: 159 AHVGIHYIEHI 169
>U80030-6|AAG24164.1| 367|Caenorhabditis elegans Serpentine
receptor, class w protein119 protein.
Length = 367
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +2
Query: 365 TATSGHFYCMHINYYMLVVFS---ALKFIKLLN--SMINKMHDMYLICIMYLIVFLRCFV 529
T+ +G +C+ I ++ +V F +L F+ + + S I+++ + LI C
Sbjct: 269 TSKTGLVFCVTITFF-IVEFPYGLSLGFLWMFDYDSGISRILSFFGFIFSMLITLNTCTH 327
Query: 530 VFNCCLVSTNYYFEYIKPYVCCIIVQFNNVQLVS 631
+F C ++S+ Y I + C ++ N+ Q+++
Sbjct: 328 LFVCLIISSQYRKSTIHAFTCGLV---NSKQMIA 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,359
Number of Sequences: 27780
Number of extensions: 288118
Number of successful extensions: 730
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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