Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0821
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   2.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 503 LIVFLRCFVVFNCCLVSTNYYFEYIKPYVC 592
           +I  LRC  +F   ++ T+Y+   + P  C
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVMPCNC 30


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 679 SNEIRVGSKLDIN*NYGN*LYIVELYNYTTNIWFDIFEIVISR 551
           S E ++ S L  N NY N  Y     NY   +++  + I I +
Sbjct: 309 SKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQ 351


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 509 VFLRCFVVFNCCLVSTNY 562
           VFL C+V F C  + T+Y
Sbjct: 280 VFLICWVPFFCVNIVTSY 297


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 268 FVHLYTLWQSRVRN*EKKTINTSIKS*NYL 179
           F H Y +++S     EK+ +N  + S N L
Sbjct: 40  FHHTYIIYESLCGRHEKRLLNELLSSYNTL 69


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 268 FVHLYTLWQSRVRN*EKKTINTSIKS*NYL 179
           F H Y +++S     EK+ +N  + S N L
Sbjct: 40  FHHTYIIYESLCGRHEKRLLNELLSSYNTL 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,716
Number of Sequences: 438
Number of extensions: 4149
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)