Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0819
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   3.6  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   6.3  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.4  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   8.4  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   8.4  

>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 66  DYAHMKFNKKCTQSIHYYNYGLLVCLFNKSLYI 164
           DY+ +K+   C +  +YY   L VC+ +KS +I
Sbjct: 217 DYSFVKYLASCLE--YYYPQSLGVCILHKSPWI 247


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 554 LGWGSRCNYTETLELNLKVAGAFTL 480
           + W S  NYT  + + +K  G FT+
Sbjct: 282 ISWASNWNYTNDVPMRMKHRGMFTI 306


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 518 RSQYSYNGCPTPNRNALLLHGRNRQGGGTYPCGLTKGHTTNKL 646
           R Q  Y+G    N  A +   R R     Y   L+KGHTTN L
Sbjct: 246 RIQGKYSG---ENVRARIELARERNRKRDYVSNLSKGHTTNAL 285


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 554 NRNALLLHGRNRQGGGTYPCGL---TKGHTTNKLIIFSAVKFKLLLTKVG 694
           N   ++LHG N Q      CGL   T  +T    I F++    +  T+ G
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFMVTSSNTNKWKIAFASFLLGMFFTQFG 155


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 303 HQQRHLPGSFANLNHPGATQTHTKKIIQINPVV*EEF 193
           H++    GSF N+N  G++  +  K+ +  PV  E F
Sbjct: 595 HKEGECVGSFCNINAKGSSLNNIPKLPRFVPVPSEFF 631


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 212 GLI*MIFFVCVWVAPGWF 265
           G I ++ F+CV +A GWF
Sbjct: 203 GFILIVTFICVRIAWGWF 220


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +3

Query: 234 LYAFGWRLDGLDSQMSPADGAVDGYLGYLSIRQLNGWNDLN 356
           +Y F +R+   D+         D + G+   + ++GW+++N
Sbjct: 258 VYQFFFRVPATDNWSLFVKNVDDAFFGWFGDKAISGWSNVN 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,722
Number of Sequences: 5004
Number of extensions: 62367
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)