Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0819
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0140 - 18528312-18528353,18528426-18529052,18529914-185299...    28   6.6  
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125...    28   8.7  

>01_05_0140 -
           18528312-18528353,18528426-18529052,18529914-18529962,
           18530086-18530108
          Length = 246

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/61 (34%), Positives = 35/61 (57%)
 Frame = +1

Query: 28  LNSVRGKRLLTRPTMHI*NSTKNVLSLYTIIIMGC*FVYLINLYIYNSTVRV*VTELLLN 207
           LN++RG  L+  P + +   TK    L ++II GC    L++L++ N  V   +TEL ++
Sbjct: 118 LNNLRGLVLVECPLLDMSTGTKFPDLLSSLIIRGC--HQLLSLHLCNPAV---LTELEIS 172

Query: 208 D 210
           D
Sbjct: 173 D 173


>01_06_1355 +
           36610390-36610479,36611906-36612063,36612144-36612523,
           36612600-36613583,36614228-36614292,36614946-36615024,
           36615480-36615529,36616595-36616781,36617922-36617957,
           36619226-36619348,36619466-36620386,36620506-36620636
          Length = 1067

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 515 LRSQYSYNGCPTPNRNALLLHGRNRQGGGTYPCGLTKGHTTNKLIIFSAVKFKLLLTKVG 694
           L SQ    G P PN +A  ++G     G +Y C      TTN++  F   + K  L ++ 
Sbjct: 175 LESQSFSTGIPAPNADAYTING---MPGDSYLC----PETTNRIAKFEVRRDKTYLLRII 227

Query: 695 NDCL 706
           N  L
Sbjct: 228 NAAL 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,972
Number of Sequences: 37544
Number of extensions: 416834
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)