Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0818
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   3.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.8  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.8  

>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 276 RIGELLILNNVDIITVYYNMYNVNSL*NYMYY 371
           ++ +++I NN D+ T+Y N++NV  L    Y+
Sbjct: 171 QLADIVIENNSDLETLYENIHNVLPLITPSYF 202


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 217 HHLKKIYRSQLKSNLTLH 270
           HHLK+IYR+ L SN  LH
Sbjct: 49  HHLKQIYRN-LTSNSPLH 65


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 59  FFFLLKFANSFYSKYVLVLFIFT 127
           F FL KF    +SKY  + F+FT
Sbjct: 170 FTFLPKFLKEQFSKYANLFFLFT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,525
Number of Sequences: 5004
Number of extensions: 38361
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)