Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0818
(681 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 29 0.054
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 29 0.054
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 27 0.13
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 25 0.88
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 2.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 4.7
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 6.2
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 28.7 bits (61), Expect = 0.054
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 462 FINRLVPVYAIKPFCLYLLFFFNC 533
++ +L+ YA+ FCL L FF C
Sbjct: 440 YVFQLLDSYAVSGFCLLFLMFFEC 463
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 28.7 bits (61), Expect = 0.054
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 462 FINRLVPVYAIKPFCLYLLFFFNC 533
++ +L+ YA+ FCL L FF C
Sbjct: 493 YVFQLLDSYAVSGFCLLFLMFFEC 516
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 27.5 bits (58), Expect = 0.13
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 369 NTYNFINYLHCTYYNKQL*YQHYL 298
N Y + NY + YNK+L Y++Y+
Sbjct: 87 NNYKYSNYNNYNNYNKKLYYKNYI 110
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.6 bits (51), Expect = 0.88
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -1
Query: 396 NDLINIYVCNTYN-FINYLHCTY--YNKQL*YQHYL 298
+ L N Y + YN + NY + Y YNK+L Y++Y+
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 426 SSVLNIYT*HNDLINIYVCNTYNFINYLHCTYYN 325
SS+ N Y N N Y N YN NY YYN
Sbjct: 83 SSLSNNYKYSN--YNNYNNNNYNNNNYKKLQYYN 114
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 426 SSVLNIYT*HNDLINIYVCNTYNFINYLHCTYYN 325
SS+ N Y N N Y N YN NY YYN
Sbjct: 83 SSLSNNYKYSN--YNNYNNNNYNNNNYKKLQYYN 114
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 426 SSVLNIYT*HNDLINIYVCNTYNFINYLHCTYYN 325
SS+ N Y N N Y N YN NY YYN
Sbjct: 83 SSLSNNYKYSN--YNNYNNNNYNNNNYKKLQYYN 114
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 426 SSVLNIYT*HNDLINIYVCNTYNFINYLHCTYYN 325
SS+ N Y N N Y N YN NY YYN
Sbjct: 83 SSLSNNYKYSN--YNNYNNNNYNNNNYKKLQYYN 114
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 362 YVLHTYILIKSLC 400
Y HTYI+ +SLC
Sbjct: 39 YFHHTYIIYESLC 51
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 362 YVLHTYILIKSLC 400
Y HTYI+ +SLC
Sbjct: 39 YFHHTYIIYESLC 51
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 130 ICKYKKYKDVLRIKTI 83
I K+KD+++IKTI
Sbjct: 827 ILDQNKFKDIIKIKTI 842
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 225 KVMKPN*KITNSCISISVCNLIRIIFFF 142
K+ + + N+ ++ S C+L +IF F
Sbjct: 270 KIKRKHNVFVNNILAASACSLFVVIFHF 297
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,499
Number of Sequences: 438
Number of extensions: 2807
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -