Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0817
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    29   0.67 
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.6  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   6.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.2  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   8.2  

>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 516 RLFLKKLGYEKYAALLEKEKVGAAELPYVGED 611
           +L  KKL YEKY+AL+EK  +   E P+  ED
Sbjct: 273 KLDYKKL-YEKYSALIEKYPIVFIEDPFSEED 303


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 400 KSQQHIRSGHQRHSDPYSFSNPDRVKRLTKFFGDEP 507
           K   H+ SG     D  SFS+ D       F+ DEP
Sbjct: 146 KKSHHLFSGSPLRLDLNSFSSEDNADATNSFYLDEP 181


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 130  NLASQECLCSEMGFRTLSSCSTS 62
            NL SQE LC+++ F T   C +S
Sbjct: 1685 NLLSQEALCAKLYFYTAFECMSS 1707


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 169 GSEDMLP*RRFDD-NLASQECLCSEMGFRTLSSCST--SAYMF 50
           GS D+ P    DD NL     LCS +GFR  S CS     Y+F
Sbjct: 259 GSYDLKPSAITDDRNLHGDVVLCS-LGFRYKSYCSNVGRTYLF 300


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 365 SAQRSRPSGICTSPSNTSVQVTSGIRIRIH 454
           S  +S PS +  SPS  +  +TSG+   +H
Sbjct: 98  SKTKSFPSSVTYSPSEETFPLTSGMNKSVH 127


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 182 EQSPRQDKRRSSNEHRKKQDYK 247
           EQ+ + D+  S+NE  +KQD K
Sbjct: 285 EQNDKSDEEGSNNEQEEKQDKK 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,006
Number of Sequences: 5004
Number of extensions: 47082
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)