Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0817
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.95 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 307 AHLSSEMRTQHLVMQEMDTIRAEIAALRHMYKSQQHIRSGHQRHSDPYS 453
           + +  +M TQH  MQ         A  +H+   +QH+    Q+ S   S
Sbjct: 166 SQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAAS 214


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 630 VPLGPRMRILKEAGIHQELHHLSR 701
           VPLG R  ++  A    E+ HL+R
Sbjct: 378 VPLGERQTLMFSATFPDEVQHLAR 401


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 270  AGVARGDAGALRRAPVQRNENPAPRHAGDGHHPRRDR 380
            A   +G A A  +   Q    P P   G G  P+R +
Sbjct: 1003 ANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKRGK 1039


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 266 WNRLLYPCSPVSSCAHWSSV 207
           WN L+ P  P+     W S+
Sbjct: 433 WNPLMQPKQPIKLFEQWKSI 452



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 274 ESHVVTLARSVAHLSSEMRTQHLVMQEMDTIRAEIAALRHMYKSQQHIRSG 426
           +SH       V++L+S  RTQ  + Q   T +  +  L    ++   I  G
Sbjct: 711 QSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRTASQIPQG 761


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 309 APVQRNENPAPRHA 350
           +P +RN+NP P++A
Sbjct: 24  SPKKRNKNPQPKNA 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,901
Number of Sequences: 438
Number of extensions: 3626
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)