Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0816
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562...    30   2.0  
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127...    29   2.6  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   4.5  
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294...    28   7.9  

>04_04_0802 -
           28155281-28155725,28155750-28156081,28156164-28156266,
           28156347-28156528,28156617-28156800,28156872-28156960,
           28157634-28157710,28157837-28157927,28158230-28158430
          Length = 567

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 408 DESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRILCPKLFMYRQTAYK 557
           D  +  +  V  TN+NGN+ +    R  + GTS  IL  KL   R   +K
Sbjct: 394 DYIVCDKSDVFVTNNNGNMARMLAGRRNSLGTSGHILKRKLNFRRYFGHK 443


>12_01_0171 -
           1268803-1269500,1271491-1271567,1271941-1272065,
           1272146-1272234,1272851-1272936,1273509-1273765
          Length = 443

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 288 RDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 452
           ++PQ   AL+E    D  +EN +  L++S  +   T  D +E + + D     N+
Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 267 PSQIPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGY 392
           P  +P  +DP +    N+ +  +KH  ++ PN  +  K +G+
Sbjct: 112 PRPLPPSQDPLEGQE-NQNQEHEKHFAHVAPNFNSMRKDHGF 152


>11_01_0389 -
           2937242-2939476,2939556-2939666,2941254-2941450,
           2941543-2941633
          Length = 877

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +3

Query: 249 PSNVENPSQIPEHRDPQDYTALNE---RKSQDKHTENLIPNLTNSHKSYGYTGIDKDESI 419
           P++    SQ+PE    +D    +E    KS     ++   +  N    YG  GI K  + 
Sbjct: 336 PASTSEISQLPEFITARDTVMNSEPRINKSHPNSPKHDTVDKANQDVDYGSVGIQKAAAF 395

Query: 420 VSQDKVAFT-NDNGNLYQSKESRSENS 497
           +S+D+   T  +   +    E+ +E++
Sbjct: 396 LSEDRNGATQGEKSEIKDPPENTAEHT 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,557,390
Number of Sequences: 37544
Number of extensions: 326058
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)