Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0816
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 535 INNFGHSILVEVPEFSERDSLL 470
           +NN  +++L  +  FSER +LL
Sbjct: 471 VNNAEYALLTAIVIFSERPNLL 492


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 359 RY*IFSMLILRLSFIKSRVILRV 291
           +Y +F+M+++ LS + + VIL V
Sbjct: 300 KYLLFTMILVGLSVVITIVILNV 322


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 561 LSCKPSVCT*IILGTVSWLRFLSFRNEILYFDINSHYH 448
           +SC  +V   +IL    +  F+S R+E+ +   N++++
Sbjct: 69  MSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,354
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)