Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0815
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    29   0.69 
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   4.8  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   8.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.5  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 363 VSAIRFLVEFSQSLTLDINNRPATW 289
           +S +  LVE S SL   +N RP TW
Sbjct: 349 ISLLDLLVEISSSLPKSLNYRPGTW 373


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 418 ECKRRSLTIIKVFLSPLVTADP 483
           +C  + LTIIK+  +PL   DP
Sbjct: 2   KCSNKVLTIIKLLKAPLAECDP 23


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 238 NTTPSKPSCFEKHAGCVPRRRSVIDIQREALRELNKKSN 354
           N      +C+         RR + DIQ E+L  LN  SN
Sbjct: 355 NMVSRSETCYNDGQRYDELRRELADIQNESLDSLNSSSN 393


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 240 IQKRIRSMYSTYFHEAFPTI-EVWQKALEII-SLKGFVVY 127
           + KRI S+   YF EA  T  E W +  +II +L+G   Y
Sbjct: 510 VSKRILSLAPAYFREALSTSDEEWSQHRKIIDTLEGSKKY 549


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 352 NGRNRATDGPLTATTLLAAVRRECKRRSLTIIKVFLSPLV 471
           NG  R++  P+  + L      +  RRSLT++  F S ++
Sbjct: 17  NGSRRSSINPILDSELRDKTFEKAHRRSLTLLSSFTSSML 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,886
Number of Sequences: 5004
Number of extensions: 56381
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)