Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0815
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_26994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)                  28   6.8  
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)        28   9.0  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_15994| Best HMM Match : Pox_A_type_inc (HMM E-Value=2e-06)          28   9.0  

>SB_46309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 207 MSNTWNEFVSEYDPVEALVL*KACRVRSTSPVCY 308
           +S   NE   EYDP    V  +AC+    +PV Y
Sbjct: 102 LSEKGNEKAEEYDPTGRKVYLQACKTLEVTPVSY 135


>SB_26994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 310 DIQREALRELNKKSNGRNRATDGPLTATTLLAAVRRECKRRSLTIIKVFL 459
           DI  EAL E++ +SN    A D PL+     ++V  E    S+T  +VFL
Sbjct: 12  DINEEALFEISAESNSSKMAADVPLSH----SSVNSEAAPASVTPEQVFL 57


>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 298 GDVERTRHAFQSTRASTGSYSETNSFHVFDI 206
           G V R RH     R    S+SE  S H++D+
Sbjct: 163 GGVNRIRHGHIPNRHIVASWSERGSVHIWDV 193


>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 268 EKHAGCVPRRRSVIDIQREALRELNKKSNGRNRATDGPLTATTLLAAVRRECKRRS 435
           E+HA   PR  ++ ++ R A+ EL   SN   +A +  +      ++  R   RRS
Sbjct: 215 ERHAPQAPRSANLSNLYRTAVMELRPYSNDTRQAREHKVLNKNFYSSRIRTLNRRS 270


>SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)
          Length = 348

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 214 IHGTNSFLNTTPSKPSCFEKHAGCVPRRRSVIDIQ-REALRELNK 345
           I   NS LNT   K   ++KH G +  R   +D Q +EAL   N+
Sbjct: 155 ISDLNSKLNTKSQKLKTYKKHIGELQEREKDLDRQLQEALAAKNR 199


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 357 AIRFLVEFSQSLTLDINNRPATWNAPG---MLFKARGLRRGRIQKRIRS 220
           +IR   EFS S   +I  +   W APG   +LF+ + +  G IQ  + S
Sbjct: 171 SIRIAPEFSVSDLREIPAQRLFWTAPGKRELLFQLKNVTAGEIQAELGS 219


>SB_15994| Best HMM Match : Pox_A_type_inc (HMM E-Value=2e-06)
          Length = 364

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 214 IHGTNSFLNTTPSKPSCFEKHAGCVPRRRSVIDIQ-REALRELNK 345
           I   NS LNT   K   ++KH G +  R   +D Q +EAL   N+
Sbjct: 155 ISDLNSKLNTKSQKLKTYKKHIGELQEREKDLDRQLQEALAAKNR 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,769
Number of Sequences: 59808
Number of extensions: 399448
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)