Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0814
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    91   2e-19
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    79   8e-16
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    32   0.091
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   2.0  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.0  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   7.9  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +3

Query: 234 KEEKTIKCTLGVLDPKLGAAISEALE-IQCTHTGAVPEILRGIRYHFHSLIKGLTLKACS 410
           K  K  K +LGV D  L  +I   ++ I+C  +    ++LRGIR+H   L+K L+     
Sbjct: 85  KASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLLRGIRFHGDKLLKQLSPGDFE 144

Query: 411 VAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLINLTK 524
            AQLGLGHSYSRA+VKFNV+R DNMIIQ+IA+L  L K
Sbjct: 145 RAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDK 182



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +2

Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEIL 688
           DQLDKD+NTF+MR++EWYS+HFPEL  IV +N+ Y      + D+ T+ +E L  L  ++
Sbjct: 178 DQLDKDINTFAMRMKEWYSWHFPELSKIVGDNYKYAVIVTLVGDKTTINDEMLHDLAAVV 237

Query: 689 GD 694
            D
Sbjct: 238 DD 239



 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 35/83 (42%), Positives = 53/83 (63%)
 Frame = +1

Query: 1   FEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAV 180
           +E + G++LF V   +++AA   +V+ S+ D+ +F  VV L +F P K+A  ALEN N +
Sbjct: 7   YESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENANDI 66

Query: 181 SEGILPEDLNLFLEGGLPKRKKR 249
           SEG+L + L  FLE  LPK  K+
Sbjct: 67  SEGVLNDFLKNFLELNLPKASKK 89


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
 Frame = +3

Query: 258 TLGVLDPKLGAAISE--ALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLG 431
           TL V DPKLG AI++   LE +     +V ++ RGIR H  SLI GL     +   LGL 
Sbjct: 85  TLVVADPKLGNAINKLPGLEFEIISDSSVQDLYRGIREHLSSLISGLAPSDLNAMSLGLS 144

Query: 432 HSYSRARVKFNVHRVDNMIIQSIALLINLTKML 530
           HS SR ++KF+  +VD MI+Q+IALL +L K L
Sbjct: 145 HSLSRHKLKFSPDKVDTMIVQAIALLDDLDKEL 177



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 22/52 (42%), Positives = 36/52 (69%)
 Frame = +2

Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEES 664
           D LDK++NT++MR+REWY +HFPE+  I+ +N  Y +  + +   +T C E+
Sbjct: 171 DDLDKELNTYAMRVREWYGWHFPEMGKIIQDNLAYARVIKAM-GMRTKCSET 221



 Score = 32.7 bits (71), Expect = 0.052
 Identities = 20/74 (27%), Positives = 41/74 (55%)
 Frame = +1

Query: 4   EHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAVS 183
           E +AG+A+F+  +  +L      + E +   +  + ++ L +F   +S + AL+N++A+ 
Sbjct: 6   ETAAGYAIFKAKD--KLLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNVSALV 63

Query: 184 EGILPEDLNLFLEG 225
           EG +   L+  LEG
Sbjct: 64  EGKVSSKLSSLLEG 77


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 497 NSPADQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 619
           NS A ++D ++      ++EWY   FPEL S+V     Y K
Sbjct: 124 NSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 7   HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 156
           HS G + FR+ + EEL   +   P+V +     Q + A   L+ F   K  IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/35 (25%), Positives = 24/35 (68%)
 Frame = +1

Query: 91  DLQRFNAVVTLIAFQPHKSAIVALENINAVSEGIL 195
           D++  NA++ L+   P++S ++  E++++  +G+L
Sbjct: 521 DVESQNAILLLLGCFPNQSPVLISESVSSYIQGVL 555


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 312 IQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARV 455
           I+C  TG +  ILR +R   H L        C V Q  + H +S  ++
Sbjct: 527 IECIDTGHLQFILRALRPQIHVL--SAHPYGCRVIQRAIEHCHSERKL 572


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 142 CVVGKLLKSQQH*NVANLSRTLRPEAGKPLTL 47
           CV+   L+ ++H ++  L   + PEAGK + L
Sbjct: 44  CVILGTLEFRKHRSIRRLQSMIVPEAGKSIQL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,972
Number of Sequences: 5004
Number of extensions: 65819
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)