Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0814
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                123   2e-28
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           30   2.1  
SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)                    29   3.6  
SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_57597| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)                      28   8.4  
SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)                       28   8.4  
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)            28   8.4  
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  123 bits (296), Expect = 2e-28
 Identities = 62/95 (65%), Positives = 70/95 (73%)
 Frame = +3

Query: 240 EKTIKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQ 419
           +K  K  LGV D K+GAAI E+L I C   G + E+LRGIR HF  +IKGLT    S AQ
Sbjct: 20  KKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMHFDKMIKGLTGAMASKAQ 79

Query: 420 LGLGHSYSRARVKFNVHRVDNMIIQSIALLINLTK 524
           LGLGHSYSRA+VKFN+HRVDNMIIQSIALL  L K
Sbjct: 80  LGLGHSYSRAKVKFNIHRVDNMIIQSIALLDQLDK 114



 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = +2

Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEIL 688
           DQLDKD+NTFSMRIREWYSYHFPELV IV +N++Y K A++IK RK L E+ LE L +I+
Sbjct: 110 DQLDKDINTFSMRIREWYSYHFPELVKIVNDNYMYAKVAKYIKSRKDLSEDKLEGLEDIV 169

Query: 689 GD 694
            D
Sbjct: 170 MD 171


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +2

Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 619
           D LDK++N + MR REWY +HFPEL  IV +N  Y K
Sbjct: 81  DDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAK 117



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 441 SRARVKFNVHRVDNMIIQSIALLINLTKML 530
           SR ++KF+  +VD MI+Q+I+LL +L K L
Sbjct: 58  SRYKLKFSPDKVDTMIVQAISLLDDLDKEL 87


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +2

Query: 344 DFERHTLSLPLAHQRPYPQSMQCGTAWSWPLILTSSCQVQCSPSGQHDHTINSPADQLDK 523
           ++   T SL     RP  Q  QC   +S PL L    Q  C+   +   T     D++  
Sbjct: 397 EYGTKTASLTAEESRPKHQCHQCNKGYSTPLGLAKHQQFHCNTHHKKSFTCKH-CDKIYV 455

Query: 524 DVNTFSMRIR 553
            +    M IR
Sbjct: 456 SLGALKMHIR 465


>SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 527 VNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEIL 688
           VNT +  IRE++    P   +I P +     C E I+ R   C ++L   T I+
Sbjct: 283 VNTGNPTIREFFMVDCPVEWNIGPWSKCSVSCGEGIRRRSIACRQTLANATIII 336


>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1677

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 108  CCCDFNSFPTTQVGDRCFGK 167
            CCC    FP+ +  D+CF K
Sbjct: 1198 CCCHGREFPSARTSDKCFLK 1217


>SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
 Frame = +2

Query: 179 YLKVFFLRI*IYSSKVVFQRGKNDQMHTRCTGSQARSSHQRGPGNSVH-AYRSSP--GDF 349
           Y++ F+L +  +S + + +  K  + +  C GS+A  +       S++ AY ++P  G  
Sbjct: 341 YMRPFWLALEEHSLRKLKRAKKFPENNLECMGSEALHNITLDYLYSLYEAYPNTPKFGFA 400

Query: 350 ERHTLSLPLAHQRPYPQSMQCGTAWSWPLILTSSCQVQCSPSGQHDHTI-NSPADQLDKD 526
               LS  +  +  Y  +   G    +  +  ++  +  S  G     + NS    L++ 
Sbjct: 401 FMSYLSHGIPEKLSYADNDLVGYLERYKKLRNNTILIILSDHGARIGPLRNSMQGSLEER 460

Query: 527 VNTFSMRIREWYSYHFPELVSIVPEN 604
           +   S+ + EW+   +PELV+ +  N
Sbjct: 461 LPMLSIVLPEWFESKYPELVANMQHN 486


>SB_57597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 355 PLKISGTAPVCVH*ISRASLMAAPSLGSSTPSVHLIVFSSLEDHLRGIDSNPQ 197
           P+ +SG + V V  ++   + A PS+  ST S    V S +E ++  ++ NPQ
Sbjct: 134 PVGVSGASAVGVSGVTPVYMYAVPSVSVSTVST---VMSDMETNVLYMEYNPQ 183


>SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)
          Length = 420

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 305 PGNSVHAYRSSPGDFERHTLSLPLAHQRPYPQSMQCGTAWSW 430
           P N++  YRS P +  R+  S+P    R Y  + + G  + W
Sbjct: 348 PENAMRYYRSIPENAMRYYRSVPEIAMRYYRSATEIGMRYFW 389


>SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 160 LENINAVSEGILPEDLNLFLEGGLPK 237
           L      + G+L EDL +  EGGLPK
Sbjct: 140 LRKTRVYTRGLLGEDLRMRTEGGLPK 165


>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
          Length = 599

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 189 YSS*GFESIPRRWSSKEEKTIKCTLGVLDPKL 284
           Y+S  F  +PR  S   E+  KCTL ++ P L
Sbjct: 486 YASVVFADLPRYLSDSLERVQKCTLAIIYPGL 517


>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 253 NAHSVYWIPS*EQPSARPWKFSARIQEQSRRF*EAYVITSTRSSKALPSKHAVWHSLVLA 432
           ++H +  + +   PSA  WKF+      S      Y   + R  + +P        L L 
Sbjct: 411 SSHMICAVATQGDPSADQWKFNGNYDRNSIVRQVLYQAPAARYVRVVPISETGSKCLRLE 470

Query: 433 THTHELVSSSMF--TEWT 480
            + H L S + +  +EWT
Sbjct: 471 LYGHRLGSGTAYSDSEWT 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,940,974
Number of Sequences: 59808
Number of extensions: 520472
Number of successful extensions: 3558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)