Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0814
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 115  QQH*NVANLSRTLRPEAGKPLTLQIQQ 35
            QQ    + + R +    GKP+ +QIQQ
Sbjct: 1074 QQSIQTSGMQRIIAQIGGKPIAVQIQQ 1100


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 473 SGQHDHTINSPAD 511
           SG++DHT N P D
Sbjct: 60  SGEYDHTKNYPFD 72


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 473 SGQHDHTINSPAD 511
           SG++DHT N P D
Sbjct: 57  SGEYDHTKNYPFD 69


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 314 NFQGLADGCS*LGIQYT-ECAFDRFFLFGRPPSRNRFKSSGRIPSDTALIFSKATIAD 144
           +F+  A   S LG + T E   D F   GRP +++   SSG +     ++F      D
Sbjct: 398 SFREFAVSTSILGDKKTAEENTDYFMPIGRPRAKDYGHSSGSVIDRNGVMFFNMVTRD 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,374
Number of Sequences: 438
Number of extensions: 4105
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)