Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0810
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    65   1e-11
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    38   0.001
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    29   0.60 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.4  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   3.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   5.6  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   5.6  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   7.4  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   9.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.8  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +2

Query: 254 SHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVR 433
           + RL++     PRW   LI  A+ CY  E S V+   R +TL T+NLTF   + VDETV 
Sbjct: 51  TERLITCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVT 110

Query: 434 YTPHPSDSSKTLLKQEA 484
           Y+PHP +   T+ +QEA
Sbjct: 111 YSPHP-ELEATVFQQEA 126



 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLH 254
           MKI+ S H F +P+E V+ A W+KYPN     VI  D ++RKV+D GVL+
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLY 50


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 114 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD 242
           I T +   N  W TV+ A   +YPNP +  V+  DV+ER V D
Sbjct: 4   ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDD 46


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +1

Query: 349 SKPNTATDDFKNNKPNILSLHCC**NCTVYSTSFRFLKNITKTRSCSHCTRCAFSSYMED 528
           S P T+T  F +  P+  S +      T  S      KNI K  S     + AF   +E 
Sbjct: 422 SYPATSTRSFNDISPSSSSSYSTAQISTFPSNQESIYKNINKRLSTLEERKKAFDEIVEK 481

Query: 529 LLTNKISLNAGKGR--QAIEWVIGKFDTEIKELASSACK 639
           +LTN    NA      Q +  +      EI +L+ S  K
Sbjct: 482 ILTNYGKHNAKNMNFTQLLHELNSTLQLEISKLSKSVVK 520


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 532 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELL 657
           L N++ +++    +  +WV  K D E+KE+ +     TD  L
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTL 682


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 425 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 327
           FH  Q N D++L + FL   V ++G+L  +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 219 VVERKVVDGVLHLID*SVPNGFFHDGPR 302
           V+E KV++G+   ID  + NG  H+G R
Sbjct: 713 VLEVKVIEGLGATIDVILSNGVLHEGDR 740


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 242 WCTSSHRLVSSKWFFPRWAQALI 310
           WCTS  +++ SK F  RW+  ++
Sbjct: 60  WCTSLTKMLQSKDFRIRWSAIIL 82


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 463 NITKTRSCSHCTRCAFSSYMEDLLTNKISLNAGKGRQA 576
           N   +RS ++  +  FSS  ++L ++ I+L A +GR A
Sbjct: 56  NFNSSRSSTNDDQQTFSSQSDNLPSSPITLPAKRGRSA 93


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 340 DIRS--KPNTATDDFKNNKPN 396
           D+RS      ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 562 KGRQAIEWVIGKFDTEIKELASSACKST 645
           +G  A+E  + KFD ++KE  + A KST
Sbjct: 459 EGLSAVESAVAKFDAKVKE--AVAAKST 484


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 457 LKNITKTRSCSHCTRCAFSSYMEDLLTNKISLNAGKGR 570
           L  +TKT   +        S +E  L   +SL AG+GR
Sbjct: 249 LVGVTKTLDQARAVLTFVESIVEKSLKGTVSLTAGRGR 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,590
Number of Sequences: 5004
Number of extensions: 57035
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)