Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0809
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_42306| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=1.4)             28   6.7  
SB_10274| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)                       28   8.9  

>SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 111 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFY 1
           N   N  N NK+  N+ +   N  DN +  NN H F+
Sbjct: 97  NNNNNNNNNNKNNNNNNNNNNNNSDNDNDNNNNHHFF 133


>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 HRSSRHDG*QIERRDDGPAARISIHEERQDPI*YGLF 449
           H SS HD   +ER+   P   +  ++E++D +   LF
Sbjct: 468 HSSSGHDSPSLERKSHPPDHELPAYKEKEDQVIPSLF 504


>SB_42306| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=1.4)
          Length = 444

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 202 DGVPEEAVPARAREGGRNWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGE 381
           DG+P++   A A    R        G G + + A  SML++    +++L D + +   G 
Sbjct: 84  DGIPDQFTKALASSPIRKLDIFCPPGAGDIIVKALVSMLSRTALQSLSLSDEIGEANVGN 143

Query: 382 MMD 390
           +++
Sbjct: 144 LIE 146


>SB_10274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 844

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 546 EHRCFSARDRDEITFALSNTSSNHADLRASCYRIIRTRLDL 424
           E+R    R+  EI    S++SS H DL+ S  RI+R   D+
Sbjct: 683 EYRSMFLRNLKEILHLQSDSSSQHTDLQQS--RILRDEADV 721


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 388  PSSLLSICQPSCLLERC 338
            PSS L  CQPSC +E C
Sbjct: 1906 PSSCLLACQPSCPMECC 1922


>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
          Length = 991

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 138 LPDRSVLIGNRKQ----NEQNKNKSKMNS*HTKLNMKDNTSQINNVHEF 4
           +PDR +L    K     N ++KN +  NS    L  K+NT    N HEF
Sbjct: 87  VPDRLILFDTYKTLYTANRKHKNTTDDNS--DVLQFKENTKAYLNTHEF 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,450,842
Number of Sequences: 59808
Number of extensions: 465504
Number of successful extensions: 1479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)