Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0809
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical pr...   131   6e-31
U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate dehydro...   131   6e-31
L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate dehyd...   131   6e-31
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    31   0.84 
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.8  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.8  
AC006829-1|AAF60923.1|  258|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical
           protein F13D12.2 protein.
          Length = 333

 Score =  131 bits (316), Expect = 6e-31
 Identities = 62/96 (64%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
 Frame = +1

Query: 262 KVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSST 441
           KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMMDLQHG AF R+  +++ T
Sbjct: 22  KVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKADT 81

Query: 442 DYSITAGSKICVVTAGVRQREGDL-VSISCRETPMF 546
           DYSITAGSK+CVVTAG RQREG+  +S+  R   +F
Sbjct: 82  DYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIF 117



 Score =  121 bits (291), Expect = 6e-28
 Identities = 52/72 (72%), Positives = 64/72 (88%)
 Frame = +3

Query: 510 SRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTN 689
           +RL LVQRN ++ K IIPQL+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV GSGTN
Sbjct: 105 TRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTN 164

Query: 690 LDSARFRYLLSD 725
           LDSARFR+LLS+
Sbjct: 165 LDSARFRFLLSE 176


>U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate
           dehydrogenase protein.
          Length = 333

 Score =  131 bits (316), Expect = 6e-31
 Identities = 62/96 (64%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
 Frame = +1

Query: 262 KVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSST 441
           KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMMDLQHG AF R+  +++ T
Sbjct: 22  KVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKADT 81

Query: 442 DYSITAGSKICVVTAGVRQREGDL-VSISCRETPMF 546
           DYSITAGSK+CVVTAG RQREG+  +S+  R   +F
Sbjct: 82  DYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIF 117



 Score =  121 bits (291), Expect = 6e-28
 Identities = 52/72 (72%), Positives = 64/72 (88%)
 Frame = +3

Query: 510 SRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTN 689
           +RL LVQRN ++ K IIPQL+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV GSGTN
Sbjct: 105 TRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTN 164

Query: 690 LDSARFRYLLSD 725
           LDSARFR+LLS+
Sbjct: 165 LDSARFRFLLSE 176


>L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate
           dehydrogenase protein.
          Length = 333

 Score =  131 bits (316), Expect = 6e-31
 Identities = 62/96 (64%), Positives = 78/96 (81%), Gaps = 1/96 (1%)
 Frame = +1

Query: 262 KVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSST 441
           KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMMDLQHG AF R+  +++ T
Sbjct: 22  KVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMMDLQHGLAFTRHCTVKADT 81

Query: 442 DYSITAGSKICVVTAGVRQREGDL-VSISCRETPMF 546
           DYSITAGSK+CVVTAG RQREG+  +S+  R   +F
Sbjct: 82  DYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIF 117



 Score =  121 bits (291), Expect = 6e-28
 Identities = 52/72 (72%), Positives = 64/72 (88%)
 Frame = +3

Query: 510 SRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTN 689
           +RL LVQRN ++ K IIPQL+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV GSGTN
Sbjct: 105 TRLSLVQRNVEIFKGIIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTN 164

Query: 690 LDSARFRYLLSD 725
           LDSARFR+LLS+
Sbjct: 165 LDSARFRFLLSE 176


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -3

Query: 673 MTRCLGSPLIFHVTYVRISTGLLAITNIVSGLYFISCGIICLRTSVFLCTRSRRDHLRV 497
           MT  + S LI  V Y R         NI+  +Y I  G +CL  SV  CT+   DH ++
Sbjct: 246 MTAYVASSLI--VIYYRRDIPHEYFHNIILCIYTIPYGGLCLPLSVIYCTKWISDHRKI 302


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -1

Query: 393 QVHHLSFQFVSHHVY*SDVIRNILRQHRESCGHPNLTDPDNGHLAPISSTFSCTGWNSFF 214
           +++ LS Q   HH++ S+ I  IL   RE   H    DP N HL P S        +S F
Sbjct: 190 ELYALSHQEFGHHLW-SNAIYIILMLKREGLIHSGDIDPINRHL-PASQRPKMFNRHSAF 247

Query: 213 RDSI 202
           + S+
Sbjct: 248 QGSM 251


>Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical
           protein K04G11.5 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 15  RY*FDLYYPSYLTLCVNC 68
           RY  DL  P+YLTLCV C
Sbjct: 141 RYMTDLCPPAYLTLCVQC 158


>Z92834-12|CAB07392.5|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 555 IIPQLIKYSPDTILVIASNPVD 620
           I+  L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133


>Z81569-2|CAB04602.4|  424|Caenorhabditis elegans Hypothetical
           protein K11B4.1 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 555 IIPQLIKYSPDTILVIASNPVD 620
           I+  L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 364 DKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSK-ICVVTAGVRQREGDLVSIS 525
           D++  + MD+QH     R  K++S+ D   T   +   +V AG  + + D+  IS
Sbjct: 196 DRIDADQMDIQHNIEARRLKKMRSAKDLESTEKKEGRLLVNAGHPEEDPDIFVIS 250


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 336 IRNILRQHRESCGHPNLTDP 277
           + NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 336 IRNILRQHRESCGHPNLTDP 277
           + NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849


>AC006829-1|AAF60923.1|  258|Caenorhabditis elegans Hypothetical
           protein Y9C12A.1 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 631 YVRISTGLLAITNIVSGLYFISCGIICL 548
           YVR+  G+  + N ++ LYF+  G ICL
Sbjct: 86  YVRLPRGMF-VWNTLNSLYFLLIGTICL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,687
Number of Sequences: 27780
Number of extensions: 335059
Number of successful extensions: 1086
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)